Merge pull request #837 from FriederikeHanssen/config_freebayes

freebayes selector still used old sw name

CHANGELOG.md

@@ -46,6 +46,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - [#814](https://github.com/nf-core/sarek/pull/814) - Fix readgroups when using DragMap together with FreeBayes or Mutect2 (see issue [#780](https://github.com/nf-core/sarek/issues/780))
 - [#817](https://github.com/nf-core/sarek/pull/817) - Fix CNVKit run on tumor-only sample to be run on all samples
 - [#828](https://github.com/nf-core/sarek/pull/817) - Fix issue [#763](https://github.com/nf-core/sarek/issues/763) to run variantcalling when starting form step recalibration
+- [#837](https://github.com/nf-core/sarek/pull/837) - Fix Freebayes config selector after subworkflow renaming
 
 ### Deprecated
 

conf/modules/freebayes.config

@@ -54,7 +54,7 @@ process {
 
     // PAIR_VARIANT_CALLING
     if (params.tools && params.tools.split(',').contains('freebayes')) {
-        withName: '.*:PAIR_VARIANT_CALLING:RUN_FREEBAYES_SOMATIC:FREEBAYES' {
+        withName: '.*:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_FREEBAYES:FREEBAYES' {
             ext.args       = "--pooled-continuous \
                             --pooled-discrete \
                             --genotype-qualities \