Merge branch 'dev' of https://github.com/lconde-ucl/sarek into dev

nf-core · Mar 6, 2020 · 9c45c36 · 9c45c36
2 parents 786b39b + 9af8391
commit 9c45c36
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/main.nf b/main.nf
@@ -2223,7 +2223,7 @@ process ConcatVCF {
     else
           outputFile = "${variantCaller}_${idSample}.vcf"
     options = params.target_bed ? "-t ${targetBED}" : ""
-    intervalsOptions = params.no_intervals ? "" : "-n"
+    intervalsOptions = params.no_intervals ? "-n" : ""
     """
     concatenateVCFs.sh -i ${fastaFai} -c ${task.cpus} -o ${outputFile} ${options} ${intervalsOptions}
     """