Merge pull request #1064 from nf-core/sentieon_avoid_publishing

Avoid publishing from SENTIEON_GVCFTYPER
nf-core · Jun 5, 2023 · b3fb0d8 · b3fb0d8
2 parents c71df1f + 635780d
commit b3fb0d8
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/conf/modules/sentieon_joint_germline.config b/conf/modules/sentieon_joint_germline.config
@@ -18,6 +18,9 @@ process {
     withName: 'NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_JOINT_CALLING_GERMLINE_SENTIEON:SENTIEON_GVCFTYPER' {
         ext.args = { "--allow-old-rms-mapping-quality-annotation-data" }
         ext.prefix       = { meta.intervals_name }
+        publishDir       = [
+            enabled: false
+        ]
     }
 
     if (params.tools && params.tools.contains('sentieon_haplotyper') && params.joint_germline) {