remove variable checksums

nf-core · Nov 9, 2024 · bd2392f · bd2392f
1 parent 0a9561b
commit bd2392f
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Showing 4 changed files with 17 additions and 21 deletions.
diff --git a/tests/.nftignore b/tests/.nftignore
@@ -21,6 +21,6 @@ reports/fastqc/**/*_fastqc.{html,zip}
 reports/markduplicates/**/*.md.cram.metrics
 reports/snpeff/*/*_snpEff.csv
 reports/snpeff/*/snpEff_summary.html
-reports/vcftools/*.TsTv.qual
+reports/vcftools/**/*.TsTv.qual
 variant_calling/**/*.vcf.{gz,gz.tbi}
 .DS_Store
diff --git a/tests/start_from_markduplicates.nf.test.snap b/tests/start_from_markduplicates.nf.test.snap
@@ -122,7 +122,7 @@
             "nf-test": "0.9.0",
             "nextflow": "24.04.4"
         },
-        "timestamp": "2024-11-09T15:43:21.462742"
+        "timestamp": "2024-11-09T16:15:20.865586"
     },
     "Run with profile test | --input tests/csv/3.0/mapped_single_bam.csv --step markduplicates --tools null ": {
         "content": [
@@ -301,7 +301,7 @@
             "nf-test": "0.9.0",
             "nextflow": "24.04.4"
         },
-        "timestamp": "2024-11-09T15:40:14.730178"
+        "timestamp": "2024-11-09T16:12:33.604156"
     },
     "Run with profile test | --input tests/csv/3.0/mapped_single_cram.csv --step markduplicates --skip_tools markduplicates --tools null ": {
         "content": [
@@ -449,7 +449,7 @@
             "nf-test": "0.9.0",
             "nextflow": "24.04.4"
         },
-        "timestamp": "2024-11-09T15:49:42.410431"
+        "timestamp": "2024-11-09T16:23:55.741166"
     },
     "Run with profile test | --input tests/csv/3.0/mapped_single_cram.csv --step markduplicates --tools null ": {
         "content": [
@@ -628,6 +628,6 @@
             "nf-test": "0.9.0",
             "nextflow": "24.04.4"
         },
-        "timestamp": "2024-11-09T15:46:40.565396"
+        "timestamp": "2024-11-09T16:18:25.238396"
     }
 }
diff --git a/tests/start_from_preparerecalibration.nf.test.snap b/tests/start_from_preparerecalibration.nf.test.snap
@@ -62,7 +62,7 @@
             "nf-test": "0.9.0",
             "nextflow": "24.04.4"
         },
-        "timestamp": "2024-11-09T15:23:55.218456"
+        "timestamp": "2024-11-09T16:57:10.392231"
     },
     "Run with profile test | --input tests/csv/3.0/mapped_single_bam.csv --step prepare_recalibration --skip_tools baserecalibrator --tools strelka ": {
         "content": [
@@ -170,8 +170,7 @@
                 "vcftools_tstv_by_count.txt:md5,5ca47a28d7ae697981041d8b458ae889",
                 "test.strelka.variants.bcftools_stats.txt:md5,3b37a441393a9329104451f44e56c619",
                 "test.strelka.variants.FILTER.summary:md5,39ff2cc8eb7495a14a6b76e0ab627027",
-                "test.strelka.variants.TsTv.count:md5,ee7dafc8d941b8502a04a63dc3126fff",
-                "test.strelka.variants.TsTv.qual:md5,ef2a5a1114778239f81ae40ba2072c7d"
+                "test.strelka.variants.TsTv.count:md5,ee7dafc8d941b8502a04a63dc3126fff"
             ],
             [
 
@@ -181,7 +180,7 @@
             "nf-test": "0.9.0",
             "nextflow": "24.04.4"
         },
-        "timestamp": "2024-11-09T15:25:27.999435"
+        "timestamp": "2024-11-09T16:58:48.877928"
     },
     "Run with profile test | --input tests/csv/3.0/mapped_single_cram.csv --step prepare_recalibration --skip_tools baserecalibrator --tools strelka ": {
         "content": [
@@ -289,8 +288,7 @@
                 "vcftools_tstv_by_count.txt:md5,5ca47a28d7ae697981041d8b458ae889",
                 "test.strelka.variants.bcftools_stats.txt:md5,3b37a441393a9329104451f44e56c619",
                 "test.strelka.variants.FILTER.summary:md5,39ff2cc8eb7495a14a6b76e0ab627027",
-                "test.strelka.variants.TsTv.count:md5,ee7dafc8d941b8502a04a63dc3126fff",
-                "test.strelka.variants.TsTv.qual:md5,ef2a5a1114778239f81ae40ba2072c7d"
+                "test.strelka.variants.TsTv.count:md5,ee7dafc8d941b8502a04a63dc3126fff"
             ],
             [
 
@@ -300,7 +298,7 @@
             "nf-test": "0.9.0",
             "nextflow": "24.04.4"
         },
-        "timestamp": "2024-11-09T15:29:52.856068"
+        "timestamp": "2024-11-09T17:02:51.883814"
     },
     "Run with profile test | --input tests/csv/3.0/mapped_single_cram.csv --step prepare_recalibration --tools null ": {
         "content": [
@@ -393,6 +391,6 @@
             "nf-test": "0.9.0",
             "nextflow": "24.04.4"
         },
-        "timestamp": "2024-11-09T15:28:23.622922"
+        "timestamp": "2024-11-09T17:01:30.130705"
     }
 }
diff --git a/tests/start_from_recalibration.nf.test.snap b/tests/start_from_recalibration.nf.test.snap
@@ -64,7 +64,7 @@
             "nf-test": "0.9.0",
             "nextflow": "24.04.4"
         },
-        "timestamp": "2024-11-09T12:09:15.465092"
+        "timestamp": "2024-11-09T17:22:03.443847"
     },
     "Run with profile test | --input tests/csv/3.0/mapped_single_bam.csv --step recalibrate --skip_tools baserecalibrator --tools strelka ": {
         "content": [
@@ -172,8 +172,7 @@
                 "vcftools_tstv_by_count.txt:md5,5ca47a28d7ae697981041d8b458ae889",
                 "test.strelka.variants.bcftools_stats.txt:md5,3b37a441393a9329104451f44e56c619",
                 "test.strelka.variants.FILTER.summary:md5,39ff2cc8eb7495a14a6b76e0ab627027",
-                "test.strelka.variants.TsTv.count:md5,ee7dafc8d941b8502a04a63dc3126fff",
-                "test.strelka.variants.TsTv.qual:md5,ef2a5a1114778239f81ae40ba2072c7d"
+                "test.strelka.variants.TsTv.count:md5,ee7dafc8d941b8502a04a63dc3126fff"
             ],
             [
 
@@ -183,7 +182,7 @@
             "nf-test": "0.9.0",
             "nextflow": "24.04.4"
         },
-        "timestamp": "2024-11-09T12:07:55.795827"
+        "timestamp": "2024-11-09T17:20:43.396817"
     },
     "Run with profile test | --input tests/csv/3.0/mapped_single_cram.csv --step recalibrate --skip_tools baserecalibrator --tools strelka ": {
         "content": [
@@ -291,8 +290,7 @@
                 "vcftools_tstv_by_count.txt:md5,5ca47a28d7ae697981041d8b458ae889",
                 "test.strelka.variants.bcftools_stats.txt:md5,3b37a441393a9329104451f44e56c619",
                 "test.strelka.variants.FILTER.summary:md5,39ff2cc8eb7495a14a6b76e0ab627027",
-                "test.strelka.variants.TsTv.count:md5,ee7dafc8d941b8502a04a63dc3126fff",
-                "test.strelka.variants.TsTv.qual:md5,ef2a5a1114778239f81ae40ba2072c7d"
+                "test.strelka.variants.TsTv.count:md5,ee7dafc8d941b8502a04a63dc3126fff"
             ],
             [
 
@@ -302,7 +300,7 @@
             "nf-test": "0.9.0",
             "nextflow": "24.04.4"
         },
-        "timestamp": "2024-11-09T12:10:30.511453"
+        "timestamp": "2024-11-09T17:23:40.285914"
     },
     "Run with profile test | --input tests/csv/3.0/mapped_single_bam.csv --step recalibrate --tools null ": {
         "content": [
@@ -341,6 +339,6 @@
             "nf-test": "0.9.0",
             "nextflow": "24.04.4"
         },
-        "timestamp": "2024-11-09T12:06:34.599974"
+        "timestamp": "2024-11-09T17:19:08.093003"
     }
 }