need to keep wild card declaration to ensure precendence

nf-core · Jul 12, 2023 · bf43387 · bf43387
1 parent 0d8999b
commit bf43387
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/conf/test.config b/conf/test.config
@@ -47,7 +47,7 @@ params {
 
 process {
 
-    withName:'*.:FREEC_SOMATIC'{
+    withName:'.*:FREEC_SOMATIC'{
         ext.args = {
             [
                 "sample":[

diff --git a/conf/test/cache.config b/conf/test/cache.config
@@ -63,7 +63,8 @@ process {
         ext.sentieon_auth_data_base64 = secrets.SENTIEON_AUTH_DATA_BASE64
     }
 
-    withName:'FREEC_SOMATIC'{
+    // This must contain .* in order to properly overwrite the standard config in test cases
+    withName:'.*:FREEC_SOMATIC'{
         ext.args = {
             [
                 "sample":[