Merge pull request #681 from maxulysse/dev_freebayes

Fix intermediate files published
nf-core · Jul 22, 2022 · e09f18a · e09f18a
2 parents 5d53e49 + 910440f
commit e09f18a
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -16,6 +16,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 ### Fixed
 
 - [#679](https://github.com/nf-core/sarek/pull/679) - Fixed typos in subway maps
+- [#681](https://github.com/nf-core/sarek/pull/681) - Fixed intermediate files published cf [#680](https://github.com/nf-core/sarek/issues/680)
 
 ### Deprecated
 

diff --git a/conf/modules.config b/conf/modules.config
@@ -607,6 +607,9 @@ process{
         ext.prefix       = { meta.num_intervals <= 1 ? "${meta.id}" : "${meta.id}.${target_bed.simpleName}" }
         ext.args         = '--min-alternate-fraction 0.1 --min-mapping-quality 1'
         ext.when         = { params.tools && params.tools.split(',').contains('freebayes') }
+        publishDir       = [
+            enabled: false
+        ]
     }
 
     withName: 'BCFTOOLS_SORT' {