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don't publish genomicsdb files #1061

Merged
merged 25 commits into from
Jun 2, 2023
Merged

don't publish genomicsdb files #1061

merged 25 commits into from
Jun 2, 2023

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FriederikeHanssen
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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs- [ ] If necessary, also make a PR on the nf-core/sarek branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Jun 2, 2023 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 04a563c

+| ✅ 152 tests passed       |+
#| ❔   9 tests were ignored |#
!| ❗   1 tests had warnings |!

❗ Test warnings:

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.8
  • Run at 2023-06-02 15:55:33

@maxulysse maxulysse mentioned this pull request Jun 2, 2023
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@FriederikeHanssen FriederikeHanssen linked an issue Jun 2, 2023 that may be closed by this pull request
Error with GATK4_GENOMICSDBIMPORT during joint calling: Badly formed genome unclippedLoc: Query interval "[]" is not valid for this input #1035
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@FriederikeHanssen FriederikeHanssen marked this pull request as ready for review June 2, 2023 15:50
@asp8200 asp8200 mentioned this pull request Jun 2, 2023
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@maxulysse maxulysse merged commit e284e7c into nf-core:dev Jun 2, 2023
@FriederikeHanssen FriederikeHanssen mentioned this pull request Jun 2, 2023
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@asp8200 asp8200 mentioned this pull request Jun 4, 2023
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@maxulysse maxulysse maxulysse approved these changes

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@FriederikeHanssen @maxulysse @asp8200