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FIX: nf-validation schema_input #1204

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Sep 4, 2023
Merged

FIX: nf-validation schema_input #1204

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3 changes: 2 additions & 1 deletion CHANGELOG.md
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Original file line number Diff line number Diff line change
Expand Up @@ -53,8 +53,9 @@ Rapaselet is a delta formed by the Rapaätno river between the Bielloriehppe mas
- [#1184](https://github.com/nf-core/sarek/pull/1184) - Fix issue with duplicated variants in VCF from Sentieon-based joint-germline variant-calling with VQSR. (Corresponding to [#966](https://github.com/nf-core/sarek/issues/966) for GATK.)
- [#1192](https://github.com/nf-core/sarek/pull/1192) - Add `ASCATprofile.png` to ASCAT output docs
- [#1197](https://github.com/nf-core/sarek/pull/1197) - Improve `tower.yml` file to display reports in Tower ([#1190](https://github.com/nf-core/sarek/issues/1190))
- [#1202](https://github.com/nf-core/sarek/pull/1202) - Remove GitHub action step that caches Nextflow and bump other out of date actions
- [#1202](https://github.com/nf-core/sarek/pull/1202) - Remove GHA step that caches Nextflow and bump other out of date actions
- [#1203](https://github.com/nf-core/sarek/pull/1203) - Fix issue with Singularity containers on test profiles
- [#1204](https://github.com/nf-core/sarek/pull/1204) - Fix issue with nf-validation: lane can be a requirement of bam too now

### Dependencies

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10 changes: 9 additions & 1 deletion assets/schema_input.json
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Expand Up @@ -46,7 +46,14 @@
"type": "string",
"pattern": "^\\S+$",
"unique": ["patient", "sample"],
"dependentRequired": ["fastq_1"],
"anyOf": [
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{
"dependentRequired": ["fastq_1"]
},
{
"dependentRequired": ["bam"]
}
],
"meta": ["lane"]
},
"fastq_1": {
Expand All @@ -66,6 +73,7 @@
},
"fastq_2": {
"errorMessage": "FastQ file for reads 2 cannot contain spaces and must have extension '.fq.gz' or '.fastq.gz'",
"dependentRequired": ["fastq_1"],
"anyOf": [
{
"type": "string",
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