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Update config files and other minor code polishing #1325

Merged
merged 27 commits into from
Nov 10, 2023
Merged

Update config files and other minor code polishing #1325

merged 27 commits into from
Nov 10, 2023

Commits on Nov 9, 2023

  1. code polish

    @maxulysse
    maxulysse committed Nov 9, 2023
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  2. Merge branch 'dev' into config_update

    @maxulysse
    maxulysse authored Nov 9, 2023
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  3. move sentieon model to igenomes

    @maxulysse
    maxulysse committed Nov 9, 2023
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  4. Merge branch 'config_update' of github.com:nf-core/sarek into config_… 

    …update
    @maxulysse
    maxulysse committed Nov 9, 2023
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  5. update CHANGELOG

    @maxulysse
    maxulysse committed Nov 9, 2023
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  6. code polish

    @maxulysse
    maxulysse committed Nov 9, 2023
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  7. align

    @maxulysse
    maxulysse committed Nov 9, 2023
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  8. closure in modules config files

    @maxulysse
    maxulysse committed Nov 9, 2023
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  9. not an nf-core subworkflow

    @maxulysse
    maxulysse committed Nov 9, 2023
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  10. update ngscheckmate ncm module

    @maxulysse
    maxulysse committed Nov 9, 2023
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  11. single over double quotes

    @maxulysse
    maxulysse committed Nov 9, 2023
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  12. use config file from subworkflows

    @maxulysse
    maxulysse committed Nov 9, 2023
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  13. update tags

    @maxulysse
    maxulysse committed Nov 9, 2023
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  14. code polish

    @maxulysse
    maxulysse committed Nov 9, 2023
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  15. Apply suggestions from code review

    @maxulysse
    maxulysse authored Nov 9, 2023
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  16. closure here too

    @maxulysse
    maxulysse committed Nov 9, 2023
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  17. Merge branch 'config_update' of github.com:nf-core/sarek into config_… 

    …update
    @maxulysse
    maxulysse committed Nov 9, 2023
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  18. code polishing

    @maxulysse
    maxulysse committed Nov 9, 2023
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  19. typo

    @maxulysse
    maxulysse committed Nov 9, 2023
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  20. exclude don't work in glob pattern

    @maxulysse
    maxulysse committed Nov 9, 2023
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  21. fix save output as bam

    @maxulysse
    maxulysse committed Nov 9, 2023
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  22. Apply suggestions from code review

    @maxulysse
    maxulysse authored Nov 9, 2023
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  23. Update conf/modules/msisensorpro.config

    @maxulysse
    maxulysse authored Nov 9, 2023
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Commits on Nov 10, 2023

  1. remove duplicate tags + md5sum

    @maxulysse
    maxulysse committed Nov 10, 2023
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  2. Merge branch 'config_update' of github.com:nf-core/sarek into config_… 

    …update
    @maxulysse
    maxulysse committed Nov 10, 2023
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  3. add sentieon model file in tests

    @maxulysse
    maxulysse committed Nov 10, 2023
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  4. Update conf/modules/markduplicates.config

    @maxulysse
    maxulysse authored Nov 10, 2023
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