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Check if flowcell id matches for paired samples #1664

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merged 6 commits into from
Oct 30, 2024

Commits on Sep 26, 2024

  1. Check if flowcell id matches for paired samples

    While constructing the read group from paired fastq samples,
    perform a check to ensure that the id is the same for
    (the first reads) in fastq_1 and fastq_2. Exit out with an
    error otherwise and report the problematic sample and file paths.
    pmoris committed Sep 26, 2024
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Commits on Oct 4, 2024

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Commits on Oct 8, 2024

  1. Update workflows/sarek/main.nf

    No need to check for paired samples as sarek only handles paired samples
    
    Co-authored-by: Maxime U Garcia <maxime.garcia@seqera.io>
    pmoris and maxulysse authored Oct 8, 2024
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  2. Fix flowcell ID check

    Check if flowcell id matches for read pair should throw error when flowcell id is found (instead of not found) AND it differs for the reads.
    pmoris committed Oct 8, 2024
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  3. Update changelog

    pmoris committed Oct 8, 2024
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Commits on Oct 30, 2024

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