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POC: references usage in CI#1769

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maxulysse wants to merge 22 commits intonf-core:devnf-core/sarek:devfrom maxulysse:referencesmaxulysse/nf-core_sarek:referencesCopy head branch name to clipboard

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Commits on Jan 10, 2025

• test CI

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  31706f0

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• fix path

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• nf-core pipelines bump-version -n 24.10.2

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Commits on Jan 23, 2025

• copy assets/schema_asset.json from nf-core/references

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  c06c3b4

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• use a schema for the references

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• language server

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• nf-core pipelines bump-version -n 24.04.2

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• code polish

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• code polish

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• de-uncomment part of code

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• no need for these modules

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• language server things

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Commits on Jan 24, 2025

• code polish

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• cursor things

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• deal properly with known_sites and known_indels

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• rescue GATK4_INTERVALLISTTOBED

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• update test for aligner

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• fix publish

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• fix some linting

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  16871fe

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• update more tests

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• deal with files in a better way

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Commits on Jan 27, 2025

• tools null vs ''

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