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Fix gatk4 cnnscorevariants #770

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merged 4 commits into from
Oct 4, 2022
Merged

Fix gatk4 cnnscorevariants #770

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1def458
Fix gatk4/cnnscorevariants modules
maxulysse Oct 4, 2022
7b2da58
add diff file for gatk4/cnnscorevariants module
maxulysse Oct 4, 2022
0178520
update CHANGELOG
maxulysse Oct 4, 2022
76223d6
fix CHANGELOG
maxulysse Oct 4, 2022
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4 changes: 3 additions & 1 deletion CHANGELOG.md
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Original file line number Diff line number Diff line change
Expand Up @@ -12,12 +12,14 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
### Changed

- [#762](https://github.com/nf-core/sarek/pull/762) - Back to dev
- [#762](https://github.com/nf-core/sarek/pull/762), [#768](https://github.com/nf-core/sarek/pull/768) - Update deepvariant module
- [#762](https://github.com/nf-core/sarek/pull/762) - Update deepvariant module

### Fixed

- [#762](https://github.com/nf-core/sarek/pull/762) - Polish CHANGELOG + figures
- [#766](https://github.com/nf-core/sarek/pull/766) - Align box description in subway map
- [#768](https://github.com/nf-core/sarek/pull/768) - Use double quotes to fix import of singularity images for deepvariant module
- [#770](https://github.com/nf-core/sarek/pull/770) - Use double quotes to fix import of singularity images for gatk4/cnnscorevariants module

### Deprecated

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3 changes: 2 additions & 1 deletion modules.json
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Expand Up @@ -143,7 +143,8 @@
},
"gatk4/cnnscorevariants": {
"branch": "master",
"git_sha": "5d72500d601432f5396e9022c3a709854197db1a"
"git_sha": "5d72500d601432f5396e9022c3a709854197db1a",
"patch": "modules/nf-core/modules/gatk4/cnnscorevariants/gatk4-cnnscorevariants.diff"
},
"gatk4/createsequencedictionary": {
"branch": "master",
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14 changes: 14 additions & 0 deletions modules/nf-core/modules/gatk4/cnnscorevariants/gatk4-cnnscorevariants.diff
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2 changes: 1 addition & 1 deletion modules/nf-core/modules/gatk4/cnnscorevariants/main.nf
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