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Update modules #822

Merged
merged 34 commits into from
Nov 14, 2022
Merged

Update modules #822

merged 34 commits into from
Nov 14, 2022

Commits on Nov 9, 2022

  1. update easy modules

    @FriederikeHanssen
    FriederikeHanssen committed Nov 9, 2022
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  2. update mappers

    @FriederikeHanssen
    FriederikeHanssen committed Nov 9, 2022
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  3. update mappers

    @FriederikeHanssen
    FriederikeHanssen committed Nov 9, 2022
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  4. Merge remote-tracking branch 'origin/modules_update' into modules_update

    @FriederikeHanssen
    FriederikeHanssen committed Nov 9, 2022
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Commits on Nov 10, 2022

  1. update markduplicates

    @FriederikeHanssen
    FriederikeHanssen committed Nov 10, 2022
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  2. fix dragmap index

    @FriederikeHanssen
    FriederikeHanssen committed Nov 10, 2022
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  3. update tiddit

    @FriederikeHanssen
    FriederikeHanssen committed Nov 10, 2022
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  4. update changelog

    @FriederikeHanssen
    FriederikeHanssen committed Nov 10, 2022
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  5. correct versions

    @FriederikeHanssen
    FriederikeHanssen committed Nov 10, 2022
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  6. merge upstream/dev

    @FriederikeHanssen
    FriederikeHanssen committed Nov 10, 2022
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  7. Update fastp

    @FriederikeHanssen
    FriederikeHanssen committed Nov 10, 2022
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  8. UPdate samtools view

    @FriederikeHanssen
    FriederikeHanssen committed Nov 10, 2022
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  9. Update workflows/sarek.nf 

    Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
    @FriederikeHanssen @maxulysse
    FriederikeHanssen and maxulysse authored Nov 10, 2022
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  10. update samtools/collatefastq

    @FriederikeHanssen
    FriederikeHanssen committed Nov 10, 2022
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  11. comment empty input channels

    @FriederikeHanssen
    FriederikeHanssen committed Nov 10, 2022
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  12. update deepvariant

    @FriederikeHanssen
    FriederikeHanssen committed Nov 10, 2022
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  13. Update bcftools

    @FriederikeHanssen
    FriederikeHanssen committed Nov 10, 2022
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Commits on Nov 11, 2022

  1. Update freebayes

    @FriederikeHanssen
    FriederikeHanssen committed Nov 11, 2022
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  2. merge upstream/dev

    @FriederikeHanssen
    FriederikeHanssen committed Nov 11, 2022
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  3. update CHANGELOG

    @FriederikeHanssen
    FriederikeHanssen committed Nov 11, 2022
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  4. fix channel input

    @FriederikeHanssen
    FriederikeHanssen committed Nov 11, 2022
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  5. remove accidental sambamba addition

    @FriederikeHanssen
    FriederikeHanssen committed Nov 11, 2022
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  6. update dragmap

    @FriederikeHanssen
    FriederikeHanssen committed Nov 11, 2022
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  7. uuuuugh more meta2 map issues

    @FriederikeHanssen
    FriederikeHanssen committed Nov 11, 2022
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  8. formatting

    @FriederikeHanssen
    FriederikeHanssen committed Nov 11, 2022
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Commits on Nov 13, 2022

  1. update samtools

    @FriederikeHanssen
    FriederikeHanssen committed Nov 13, 2022
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  2. some checksums

    @FriederikeHanssen
    FriederikeHanssen committed Nov 13, 2022
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  3. remove tmb test files

    @FriederikeHanssen
    FriederikeHanssen committed Nov 13, 2022
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  4. dragen test always using docker

    @FriederikeHanssen
    FriederikeHanssen committed Nov 13, 2022
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  5. dragmap update causes segementation fault

    @FriederikeHanssen
    FriederikeHanssen committed Nov 13, 2022
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  6. new dragmpa version has segmentation dump faults

    @FriederikeHanssen
    FriederikeHanssen committed Nov 13, 2022
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  7. dragmap version was never reported

    @FriederikeHanssen
    FriederikeHanssen committed Nov 13, 2022
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Commits on Nov 14, 2022

  1. md5sums

    @FriederikeHanssen
    FriederikeHanssen committed Nov 14, 2022
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  2. update changelog

    @FriederikeHanssen
    FriederikeHanssen committed Nov 14, 2022
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