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70 Open 563 Closed
70 Open 563 Closed
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Issues list

Y25-030 - As an Automation Specialist (Abdulrahman T) I want to be able to download a file for normalisation on the Beckman in the '16S RNA' pipeline so that we can perform QC. 16S RNA Need to Verify Needs Refinement Size: S Small - low effort & risk
#4620 opened Jan 17, 2025 by TWJW-SANGER
2 tasks
Y25-029 - As an Automation Specialist (Abdulrahman T) I want bed verifications performed on the '16S RNA' pipeline so that we can avoid plate swaps. 16S RNA Needs Refinement Size: S Small - low effort & risk
#4619 opened Jan 17, 2025 by TWJW-SANGER
3 tasks
Y25-028 - As a SSR (Liz C) I would like to be able to create and submit manifests for the '16S RNA' sequencing pipeline so that faculty can send samples to it. 16S RNA Needs Refinement Size: M Medium - medium effort & risk
#4618 opened Jan 17, 2025 by TWJW-SANGER
3 tasks
Y24-190 SS v2 Clean Up Tasks
#4617 opened Jan 17, 2025 by harrietc52
2 tasks
@harrietc52 @StephenHulme
Y24-190-4: API V2 Milestone 4
#4615 opened Jan 17, 2025 by StephenHulme
2
@harrietc52 @StephenHulme
1
Y25-024 - As a TL (Tris B) I would like SequenceScape to generate a Sample Sheet to load into the Element Aviti sequencer so that we can run it. Element Aviti Phase 2 Needs Refinement
#4606 opened Jan 15, 2025 by TWJW-SANGER
2 tasks
Y25-023 - As TL (Tris B) I would like batches sequenced on the Element Aviti to be marked complete when the Data QC complete API endpoint is called so that I can see they have completed. Element Aviti Phase 2 Needs Refinement
#4605 opened Jan 15, 2025 by TWJW-SANGER
2 tasks
Y25-022 - As a TL (Tris) I would like to be able to "Request Additional Sequencing" on a library on the Element Aviti sequencer so that we can use the new sequencer. Element Aviti Phase 2 Needs Refinement
#4604 opened Jan 15, 2025 by TWJW-SANGER
4 tasks
Y25-021 - As TL (Tris) I would like to have an "Element Aviti" pipeline page so that I can schedule and monitor batches on this new sequencer. Element Aviti Phase 2 Needs Refinement
#4603 opened Jan 15, 2025 by TWJW-SANGER
8 tasks
Y25-020 - As a TL (Tris B) I would like to be able to create a submission to perform Element Aviti sequencing on any pipeline on the Submissions page so that we can use the new sequencer. Element Aviti Phase 2 Needs Refinement
#4602 opened Jan 15, 2025 by TWJW-SANGER
4 tasks
Y25-019 - As Tris B (TL) I would like to be able to submit libraries from any short read pipeline to the Element Aviti Sequencer so that faculty can save money for low to mid throughput pipelines. Element Aviti Phase 2 EPIC An EPIC task with sub-tasks Research Research only
#4600 opened Jan 15, 2025 by TWJW-SANGER
7 tasks
Y25-005 - As a TL I would like to work through the 16S pipeline process map and build an initial backlog of user stories to support it in Limber. 16S RNA Research Research only
#4584 opened Jan 7, 2025 by TWJW-SANGER
3 tasks
Y25-004 - As Ya-Lin H I would like a SQL query created and tested that can run against the SequenceScape database and produce a table of creation times for plates with 'RVI RT' purpose so that we can report the start times for RVI pipeline process. RVI RVI project Sample Tracking Size: S Small - low effort & risk
#4583 opened Jan 6, 2025 by TWJW-SANGER
2 tasks
3
Y25-003 - Additional basic validations for scRNA Core cDNA Prep submission scRNA - cDNA prep scRNA Size: S Small - low effort & risk
#4580 opened Jan 3, 2025 by yoldas
3 tasks
Y25-002 - [BUG] Duplicate Samples per Pool validations for scRNA cDNA Prep Submission Bug Bug in code scRNA - cDNA prep scRNA Size: S Small - low effort & risk
#4579 opened Jan 3, 2025 by yoldas
2 tasks
3
Y24-525 - Tube rack manifests - research On Hold On hold Research Research only Tube Racks
#4572 opened Dec 18, 2024 by KatyTaylor
1 of 4 tasks
@KatyTaylor
2
Y24-524 - Refactor tube rack creation code On Hold On hold Technical Debt Tube Racks
#4571 opened Dec 18, 2024 by KatyTaylor
Y24-523 - Remove Heron tube racks code Technical Debt Tube Racks
#4570 opened Dec 18, 2024 by KatyTaylor
1 task
Y24-495 - As a TL I want to know when creating or updating sample metadata in the EGA/ENA fail so that we can catch errors early. Data integrity Data Integrity
#4540 opened Dec 3, 2024 by TWJW-SANGER
3 tasks
Y24-492 - Tol BIOSCAN need a digital link between identifiers to enable them to report on the samples they have processed Research Research only
#4537 opened Dec 3, 2024 by sabrine33
6 tasks
@sabrine33
2
Y24-478 - Complete documentation of API v2 resources Documentation Technical Debt
#4522 opened Nov 26, 2024 by sdjmchattie
@harrietc52 @StephenHulme
Y24-477 - Make sure API v2 endpoints will not allow deletion of resources Data integrity Data Integrity Technical Debt
#4521 opened Nov 26, 2024 by sdjmchattie
3 tasks
@harrietc52 @StephenHulme
Y24-471 - [BUG] date_of_sample_collection is missing from the sample show page Bug Bug in code
#4514 opened Nov 22, 2024 by neilsycamore
Y24-470 - As a Data Release Manager (Quan L) I would like the "Resequencing" option from the Study Type field on the Study setup page to be removed Data Release
#4508 opened Nov 20, 2024 by wendyyang
Y24-462 - Update study release strategy/timing data to conform to new validation rules.
#4507 opened Nov 18, 2024 by neilsycamore
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