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@36000 36000 released this 05 Jan 23:15
· 719 commits to master since this release
1.0
f58bf39

This is the first major release of pyAFQ. The API should be stable
from here until the next major release of pyAFQ.
Adds freewater DTI, fiber density maps, VOF and pAF bundles,
and montage and combine bundle visualizations, as well as other
minor additions, fixes, and documentation updates.

  • [FIX] Missing underscore in custom tissue property filenames (#944)
  • [FIX] finally finish this SLR PR (#937)
  • Add fwDTI (#931)
  • [FIX] Import tract docs (#936)
  • TST: Fixes another failing nightly test by setting the seed. (#932)
  • DOC: Fix the random seed for the OR example. (#930)
  • TST: Fix a random seed for this test. (#929)
  • [FIX] don't resample subject-space ROIs unless user provides something (#919)
  • [ENH] Density task (#900)
  • Increase inclusion tolerance for pAF; add suffix for cmd_outputs (#921)
  • [DOC] add interactive bundle viz to OR example (#861)
  • [ENH] Allow pediatric bundledict and template to be accessed from config file. (#923)
  • [FIX] Some pediatric bundle dict fixes (#922)
  • DOC: Adds an example of visualizations using FURY. (#910)
  • [FIX] put afq_metadata.toml in the correct spot (#913)
  • [FIX] Updating DIPY tracking params (#911)
  • [ENH] VOF endpoints don't include pAF endpoints (#912)
  • DOC: Document S3BIDS access examples. (#909)
  • [FIX] correctly calculate min / max sl length, update step_size docs (#905)
  • Added streamline filtering by primary orientation; other bundle definition fixes (#898)
  • [FIX] cmd output only run on our files (#881)
  • Set logger levels to INFO (#867)
  • [DOC] add pyafq overview desciption (#875)
  • Fix nightly tests (#873)
  • Upgrade pybids. (#869)
  • [ENH] Apply arbitrary command to some/all pyAFQ outputs, more BIDSy names (#853)
  • [FIX] only calc subject registration images when necessary (#862)
  • RF: Removes key-word argument that is not being used. (#868)
  • ENH: add DKI kurtosis fit elements as scalars (#865)
  • ENH: add lower triangular scalars from DTI (could be useful for ML)? (#863)
  • FIX: Reorder endpoint (#858)
  • [FIX] Some ITK map fixes for running with groupAFQ and in CLI (#855)
  • [ENH] Add montage and combine bundle to GroupAFQ (#849)
  • [DOC] add fatal error when no bundles found at all (#851)
  • [ENH] add median bundle len function (#852)
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