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Add marmoset genome and add rule to reformat GTFs missing attributes
Auto add reponame as label to all issues and PRs #322: Pull request #185 opened by kelly-sovacool
December 3, 2024 22:03 13s fix-gtf
December 3, 2024 22:03 13s
Create a test workflow cronjob
Auto add reponame as label to all issues and PRs #321: Issue #183 opened by kopardev
December 2, 2024 19:23 13s
December 2, 2024 19:23 13s
fix: lowercase SIFs dir
Auto add reponame as label to all issues and PRs #320: Pull request #182 opened by kelly-sovacool
December 2, 2024 16:59 17s sif-cache
December 2, 2024 16:59 17s
new sif images not in cache
Auto add reponame as label to all issues and PRs #319: Issue #181 opened by kelly-sovacool
December 2, 2024 15:59 20s
December 2, 2024 15:59 20s
refactor: simplify bin/redirect
Auto add reponame as label to all issues and PRs #318: Pull request #179 opened by kelly-sovacool
November 27, 2024 03:58 12s refactor-redirect
November 27, 2024 03:58 12s
fix: import image_cache() for renee build command
Auto add reponame as label to all issues and PRs #317: Pull request #178 opened by kelly-sovacool
November 26, 2024 21:28 13s fix-cache-import
November 26, 2024 21:28 13s
create new reference files for marmoset genome
Auto add reponame as label to all issues and PRs #316: Issue #177 opened by kopardev
November 26, 2024 17:07 15s
November 26, 2024 17:07 15s
fix: upgrade python-based docker containers to use versions with PYTHONPATH unset
Auto add reponame as label to all issues and PRs #315: Pull request #176 opened by kelly-sovacool
November 26, 2024 15:55 18s python-paths
November 26, 2024 15:55 18s
RENEE GUI failing
Auto add reponame as label to all issues and PRs #314: Issue #175 opened by samarth8392
November 26, 2024 15:53 14s
November 26, 2024 15:53 14s
upgrade all python dockers
Auto add reponame as label to all issues and PRs #313: Issue #174 opened by kelly-sovacool
November 26, 2024 15:31 14s
November 26, 2024 15:31 14s
fix: upgrade rseqc container
Auto add reponame as label to all issues and PRs #312: Pull request #172 opened by kelly-sovacool
November 25, 2024 18:57 12s rseqc-v3
November 25, 2024 18:57 12s
Numpy error in rules inner_distance and RSeQC
Auto add reponame as label to all issues and PRs #311: Issue #171 opened by samarth8392
November 25, 2024 17:40 13s
November 25, 2024 17:40 13s
fix: throw error if too few reads pass the cutadapt filter
Auto add reponame as label to all issues and PRs #310: Pull request #170 opened by kelly-sovacool
November 22, 2024 16:34 1m 6s cutadapt-qc
November 22, 2024 16:34 1m 6s
fix: keep genomic bam
Auto add reponame as label to all issues and PRs #309: Pull request #169 opened by kelly-sovacool
November 22, 2024 15:21 16s keep-bam
November 22, 2024 15:21 16s
chore: delete miniconda container
Auto add reponame as label to all issues and PRs #308: Pull request #168 opened by kelly-sovacool
November 21, 2024 17:00 17s conda-container
November 21, 2024 17:00 17s
refactor: consolidate build_cluster.json into main cluster.json
Auto add reponame as label to all issues and PRs #307: Pull request #167 opened by kelly-sovacool
November 7, 2024 12:51 15s iss-125
November 7, 2024 12:51 15s
are aws s3 resources downloadable by all?
Auto add reponame as label to all issues and PRs #306: Issue #166 opened by kelly-sovacool
November 4, 2024 21:20 14s
November 4, 2024 21:20 14s
ci: rename main to build
Auto add reponame as label to all issues and PRs #305: Pull request #164 opened by kelly-sovacool
October 25, 2024 15:29 12s ci-build
October 25, 2024 15:29 12s
fix: correct renee base path for cache subcommand
Auto add reponame as label to all issues and PRs #304: Pull request #163 opened by kelly-sovacool
October 25, 2024 15:01 12s iss-162
October 25, 2024 15:01 12s
renee cache -- broken path to containers
Auto add reponame as label to all issues and PRs #303: Issue #162 opened by kelly-sovacool
October 25, 2024 14:54 15s
October 25, 2024 14:54 15s
Error running renee build for marmoset reference genome
Auto add reponame as label to all issues and PRs #302: Issue #161 opened by nmkuehn
September 30, 2024 17:16 15s
September 30, 2024 17:16 15s
ResourceWarning in v2.6
Auto add reponame as label to all issues and PRs #301: Issue #160 opened by kelly-sovacool
September 24, 2024 15:18 15s
September 24, 2024 15:18 15s
add debug subcommand
Auto add reponame as label to all issues and PRs #300: Pull request #159 opened by kelly-sovacool
September 19, 2024 17:47 12s print-base
September 19, 2024 17:47 12s
chore: specify ccbr_tools version v0.1.0
Auto add reponame as label to all issues and PRs #299: Pull request #157 opened by kelly-sovacool
August 27, 2024 16:59 11s tools-version
August 27, 2024 16:59 11s
Update doc website with more FAQs and expect output tab
Auto add reponame as label to all issues and PRs #298: Pull request #156 opened by samarth8392
August 22, 2024 21:23 12s doc-faqs
August 22, 2024 21:23 12s