-
Notifications
You must be signed in to change notification settings - Fork 28
Boehm_JProteomeRes2014
Max Schelker edited this page Aug 29, 2016
·
4 revisions
Reference: Boehm et al. Identification of Isoform-Specific Dynamics in Phosphorylation-Dependent STAT5 Dimerization by Quantitative Mass Spectrometry and Mathematical Modeling. J. Proteome Res., 2014, 13 (12), pp 5685–5694
Folder: /Examples/Boehm_JProteomeRes2014
.
Facts: The model contains 48 data points, 9 free parameters and 1 experimental conditions.
- Installation and system requirements
- Setting up models
- First steps
- Advanced events and pre-equilibration
- Computation of integration-based prediction bands
- How is the architecture of the code and the most important commands?
- What are the most important fields of the global variable ar?
- What are the most important functions?
- Optimization algorithms available in the d2d-framework
- Objective function, likelhood and chi-square in the d2d framework
- How to set up priors?
- How to set up steady state constraints?
- How do I restart the solver upon a step input?
- How to deal with integrator tolerances?
- How to implement a bolus injection?
- How to implement washing and an injection?
- How to implement a moment ODE model?
- How to run PLE calculations on a Cluster?