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What are the most important fields of the variable ar?
Joep Vanlier edited this page Apr 15, 2018
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Graphical summary of some important informations stored in the global variable ar
. The variable ar
comprehensively contains the model equations, data, configuration options and fitting results generated in the d2d framework. The profile likelihood calculation are stored in ar.ple
.
For additional information invoke arHelpStruct
in MATLAB.
Abbreviations used in the figure: bol = boolean variable, c.s. = condition specific, d.s. = data specific, m.s. = model specific, repl=replacement, trsf = transformation.
- Installation and system requirements
- Setting up models
- First steps
- Advanced events and pre-equilibration
- Computation of integration-based prediction bands
- How is the architecture of the code and the most important commands?
- What are the most important fields of the global variable ar?
- What are the most important functions?
- Optimization algorithms available in the d2d-framework
- Objective function, likelhood and chi-square in the d2d framework
- How to set up priors?
- How to set up steady state constraints?
- How do I restart the solver upon a step input?
- How to deal with integrator tolerances?
- How to implement a bolus injection?
- How to implement washing and an injection?
- How to implement a moment ODE model?
- How to run PLE calculations on a Cluster?