Features/fix mvp 114 #967
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Features/fix mvp 114 #967
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Recompiled dependencies to use hive default branch.
* Added a failure if gzip fails to complete properly * Switched backtick gzip to perl package in mysqldump and dumpfile * bugfix * revert and fixed the compress calls * revert and fixed the compress calls * unpack the arrayref to array * fixed flat file to pass array reference. * Removed automatic flow for tsvs * Readded flow to tsvs and fixed bug with a conditional * Readded param_required and added optional flow * Swapped array is empty test for a better one * removed array test as the files should alwalys be generated * Swapped array is empty test for a better one and fixed flow * Modified array ref --------- Co-authored-by: vinay-ebi <vinay@ebi.ac.uk>
fix data_files path removig the vertebrates folder
Fix symlink path
…ease/111 # Conflicts: # requirements.txt
Release/merge 111
Updating test dbs to latest schema
Add gencode primary tag to GFF3 files
Updated download URL for miRBase miRNA.dat file
Updated download URL for miRBase miRNA.dat file
Updated .gitignore + patch DQ forgotten when initially branching
…-fixes-110 # Conflicts: # scripts/py/regulation_ftp_symlinks.py
Bugfixes/merge fixes 110
Co-authored-by: Tamara El Naboulsi <ten@codon-login-06.ebi.ac.uk>
Updated Core stats resources.
Hotfix/xref TSV dump
Report from main
…s we actually requested 9. Added SLURM specifications
Update python version to 3.10
Minor bugfixes and updates for the XrefDownload pipeline
fix delete group param in dbcopy pipeline
# Conflicts: # modules/Bio/EnsEMBL/Production/Pipeline/Flatfile/DumpFile.pm # modules/Bio/EnsEMBL/Production/Pipeline/PipeConfig/Base_conf.pm # modules/Bio/EnsEMBL/Production/Pipeline/PipeConfig/DumpCore_conf.pm # modules/Bio/EnsEMBL/Production/Pipeline/PipeConfig/LoadRefget_conf.pm # modules/Bio/EnsEMBL/Production/Pipeline/PipeConfig/ProteinFeatures_conf.pm # modules/Bio/EnsEMBL/Production/Pipeline/TSV/DumpFileEna.pm # requirements.in # requirements.txt # src/python/scripts/genome_info.py
…res/fix_mvp_114 # Conflicts: # .travis.yml
This reverts commit 5372422
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Update release/mvp branch with latest changes form main release branch release/114.