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Update cdeps to include the latest changes from ESCOMP/CDEPS #52

Merged
merged 132 commits into from
Feb 21, 2023

Commits on Aug 25, 2022

  1. addition of namelist based skip restart functionality to dlnd, docn, …

    …drof, dwav (ESCOMP#180)
    
    * add skip_restart functionality to all components that can use it
    mvertens authored Aug 25, 2022
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Commits on Aug 29, 2022

  1. initialize logunit (ESCOMP#185)

    * initialize logunit
    
    * cleanup stream logunit initialization
    
    * remove unused variable logunit
    jedwards4b authored Aug 29, 2022
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Commits on Aug 30, 2022

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Commits on Sep 2, 2022

  1. Add ozone DATM streams (ESCOMP#188)

    Co-authored-by: Mariana Vertenstein <mvertens@ucar.edu>
    Co-authored-by: Adrianna Foster <adrifost@ucar.edu>
    3 people authored Sep 2, 2022
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Commits on Sep 22, 2022

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  3. add standalone function

    jedwards4b committed Sep 22, 2022
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Commits on Sep 23, 2022

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  6. use modulo here

    jedwards4b committed Sep 23, 2022
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Commits on Sep 27, 2022

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  2. add further documentation

    jedwards4b committed Sep 27, 2022
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Commits on Sep 29, 2022

  1. one more calendar mod

    jedwards4b committed Sep 29, 2022
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  2. Merge pull request ESCOMP#191 from jedwards4b/leap_year_corrections

    correct mismatch of leap year
    ### Description of changes
    Handle a number of special cases in matching inputdata dates to model dates.
    These cases are:
    
    -   Model is no_leap, data is Gregorian and leapyear date 2/29 is encountered in data - skip date
    -   Model is Gregorian, data is no_leap and leapyear date 2/29 is encountered in model - repeat 2/28 data
    -   Model is Gregorian, data is gregorian but leapyears do not align.
    -       if in model leap year repeat data from 2/28 
    -       if in data leap year skip date 2/29
    
    
    ### Specific notes
    
    Contributors other than yourself, if any:  @mvertens 
    
    CDEPS Issues Fixed (include github issue #): ESCOMP#190 
    
    Are there dependencies on other component PRs (if so list): ESCOMP/CESM_share#35
    
    Are changes expected to change answers (bfb, different to roundoff, more substantial): bfb
    
    Any User Interface Changes (namelist or namelist defaults changes):
    
    Testing performed (e.g. aux_cdeps, CESM prealpha, etc):  Neon spinup of over 100 years
    
    Hashes used for testing:
    
    sM  ./ccs_config
            modified sandbox, ccs_config_cesm0.0.44 (branch main) --> ccs_config_cesm0.0.38
        ./cime
            clean sandbox, on cime6.0.45
    s   ./components/cdeps
            clean sandbox, 0f3f707 (branch leap_year_corrections) --> cdeps0.12.63
        ./components/cdeps/fox
            clean sandbox, on 4.1.2.1
        ./components/cdeps/share/genf90
            clean sandbox, on genf90_200608
        ./components/cism
            clean sandbox, on cismwrap_2_1_95
        ./components/cism/source_cism
            clean sandbox, on cism_main_2.01.011
     M  ./components/cmeps
            modified sandbox, on cmeps0.13.71
        ./components/cpl7
            clean sandbox, on cpl7.0.14
        ./components/mizuRoute
            clean sandbox, on 34723c2e4df7caa16812770f8d53ebc83fa22360
        ./components/mosart
            clean sandbox, on mosart1_0_45
        ./components/rtm
            clean sandbox, on rtm1_0_78
    e-o ./doc/doc-builder
            -, not checked out --> v1.0.8
        ./libraries/mct
            clean sandbox, on MCT_2.11.0
        ./libraries/parallelio
            clean sandbox, on pio2_5_7
    s   ./share
            clean sandbox, bfa2b5d0a9de06153f2ac94a95818568a1f5cf11 (branch shr_cal_leapyear) --> share1.0.12
        ./src/fates
            clean sandbox, on sci.1.58.1_api.24.1.0
    jedwards4b authored Sep 29, 2022
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Commits on Sep 30, 2022

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Commits on Oct 1, 2022

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Commits on Oct 3, 2022

  1. Merge pull request ESCOMP#192 from jedwards4b/edge_cases2

    handle edge case model no_leap, data gregorian
    jedwards4b authored Oct 3, 2022
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Commits on Nov 2, 2022

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Commits on Nov 7, 2022

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  2. fix mainproc variable

    jedwards4b committed Nov 7, 2022
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Commits on Nov 8, 2022

  1. fix bug in cpl_scalers

    jedwards4b committed Nov 8, 2022
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Commits on Nov 10, 2022

  1. Merge pull request ESCOMP#193 from jedwards4b/fix_auxstream_dataflow

    fixes an issue in aux data streams
    jedwards4b authored Nov 10, 2022
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Commits on Nov 17, 2022

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  2. Merge pull request ESCOMP#194 from jedwards4b/initialize_mask_field

    initialize this field so that debug doesnt fail here
    jedwards4b authored Nov 17, 2022
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Commits on Nov 30, 2022

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Commits on Dec 1, 2022

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  2. more shr_log cleanup

    jedwards4b committed Dec 1, 2022
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  3. fix build error

    jedwards4b committed Dec 1, 2022
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Commits on Dec 5, 2022

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  2. Merge pull request ESCOMP#195 from jedwards4b/shr_file_setLogUnit

    Shr file set log unit
    ### Description of changes
    depricate shr_file_getLogUnit, add shr_log_getLogUnit
    
    ### Specific notes
    require share1.0.14 for cesm
    
    Contributors other than yourself, if any:
    
    CDEPS Issues Fixed (include github issue #):
    
    Are there dependencies on other component PRs (if so list):
    
    Are changes expected to change answers (bfb, different to roundoff, more substantial):
    
    Any User Interface Changes (namelist or namelist defaults changes):
    
    Testing performed (e.g. aux_cdeps, CESM prealpha, etc): CESM prealpha cheyenne intel compared to cesm2.3.alpha10d - all consistent with baselines. 
    
    Hashes used for testing:
    jedwards4b authored Dec 5, 2022
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Commits on Dec 21, 2022

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  2. more workflow updates

    jedwards4b committed Dec 21, 2022
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  3. add autotools

    jedwards4b committed Dec 21, 2022
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  4. try reusable workflows

    jedwards4b committed Dec 21, 2022
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  5. try reusable workflows

    jedwards4b committed Dec 21, 2022
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  6. try reusable workflows

    jedwards4b committed Dec 21, 2022
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  7. try reusable workflows

    jedwards4b committed Dec 21, 2022
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Commits on Dec 22, 2022

  1. try this

    jedwards4b committed Dec 22, 2022
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  2. fix pio bld

    jedwards4b committed Dec 22, 2022
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  3. fix pio bld

    jedwards4b committed Dec 22, 2022
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  4. add back netcdf-fortran

    jedwards4b committed Dec 22, 2022
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  5. add back netcdf-fortran

    jedwards4b committed Dec 22, 2022
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  6. add back netcdf-fortran

    jedwards4b committed Dec 22, 2022
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  7. add back netcdf-fortran

    jedwards4b committed Dec 22, 2022
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  12. get stdlog from cesm shr

    jedwards4b committed Dec 22, 2022
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  13. fix for ieee == operator

    jedwards4b committed Dec 22, 2022
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  14. fix for ieee == operator

    jedwards4b committed Dec 22, 2022
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  15. fix for netcdf-fortran

    jedwards4b committed Dec 22, 2022
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  17. try again with cprgnu

    jedwards4b committed Dec 22, 2022
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  18. update documentation

    uturuncoglu committed Dec 22, 2022
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Commits on Dec 23, 2022

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  3. try reusable

    jedwards4b committed Dec 23, 2022
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  4. try reusable

    jedwards4b committed Dec 23, 2022
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  5. trigger pio build

    jedwards4b committed Dec 23, 2022
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  6. trigger pio build

    jedwards4b committed Dec 23, 2022
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  7. trigger pio build

    jedwards4b committed Dec 23, 2022
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  8. try as an action

    jedwards4b committed Dec 23, 2022
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  9. trigger pio build

    jedwards4b committed Dec 23, 2022
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  10. trigger pio build

    jedwards4b committed Dec 23, 2022
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  11. try as an action

    jedwards4b committed Dec 23, 2022
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  12. try as an action

    jedwards4b committed Dec 23, 2022
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  13. try as an action

    jedwards4b committed Dec 23, 2022
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  14. try as an action

    jedwards4b committed Dec 23, 2022
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  15. try as an action

    jedwards4b committed Dec 23, 2022
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  16. try as an action

    jedwards4b committed Dec 23, 2022
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  17. try as an action

    jedwards4b committed Dec 23, 2022
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  21. move esmf build to action

    jedwards4b committed Dec 23, 2022
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  22. finally working

    jedwards4b committed Dec 23, 2022
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  23. add esmf build action

    jedwards4b committed Dec 23, 2022
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  24. more readable name

    jedwards4b committed Dec 23, 2022
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  25. Merge pull request ESCOMP#201 from jedwards4b/reusable_workflow

    Reusable workflow
    
    Description of changes
    
    Create reusable workflows and stop duplicating code
    Specific notes
    
    Contributors other than yourself, if any:
    
    CDEPS Issues Fixed (include github issue #):
    
    Are there dependencies on other component PRs (if so list):
    
    Are changes expected to change answers (bfb, different to roundoff, more substantial):
    
    Any User Interface Changes (namelist or namelist defaults changes):
    
    Testing performed (e.g. aux_cdeps, CESM prealpha, etc):
    
    Hashes used for testing:
    jedwards4b authored Dec 23, 2022
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Commits on Dec 27, 2022

  1. update doc

    uturuncoglu committed Dec 27, 2022
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Commits on Dec 28, 2022

  1. add new section

    uturuncoglu committed Dec 28, 2022
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  2. minor fix

    uturuncoglu committed Dec 28, 2022
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  4. remove shr_mpi_mod - wip

    jedwards4b committed Dec 28, 2022
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  7. datm complete

    jedwards4b committed Dec 28, 2022
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  8. more shr_mpi replacements

    jedwards4b committed Dec 28, 2022
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  9. more shr_mpi replacements

    jedwards4b committed Dec 28, 2022
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  10. more shr_mpi replacements

    jedwards4b committed Dec 28, 2022
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  11. more shr_mpi replacements

    jedwards4b committed Dec 28, 2022
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  12. remove last shr_mpi calls

    jedwards4b committed Dec 28, 2022
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  13. get constant name correct

    jedwards4b committed Dec 28, 2022
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  14. get constant name correct

    jedwards4b committed Dec 28, 2022
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Commits on Dec 29, 2022

  1. now compiles

    jedwards4b committed Dec 29, 2022
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  2. Merge pull request ESCOMP#203 from jedwards4b/no_gfortan_warnings

    remove shr_mpi_mod
    Description of changes
    
    Remove shr_mpi_mod and replace with ESMF_VM operations.
    Specific notes
    
    Contributors other than yourself, if any:
    
    CDEPS Issues Fixed: NOAA-EMC#38
    
    Are there dependencies on other component PRs (if so list):
    
    Are changes expected to change answers: bfb
    Any User Interface Changes (namelist or namelist defaults changes): no
    
    Testing performed (e.g. aux_cdeps, CESM prealpha, etc): aux_cdeps on cheyenne intel, all pass.
    jedwards4b authored Dec 29, 2022
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  4. Merge pull request ESCOMP#202 from uturuncoglu/feature/update_doc

    Update CDEPS documentation
    uturuncoglu authored Dec 29, 2022
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  5. fix documentation

    uturuncoglu committed Dec 29, 2022
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  6. Merge pull request ESCOMP#206 from uturuncoglu/feature/doc

    fix documentation
    uturuncoglu authored Dec 29, 2022
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Commits on Jan 3, 2023

  1. code cleanup

    jedwards4b committed Jan 3, 2023
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  2. update github test

    jedwards4b committed Jan 3, 2023
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  3. use more ubuntu

    jedwards4b committed Jan 3, 2023
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  4. use more ubuntu

    jedwards4b committed Jan 3, 2023
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  5. fix flag

    jedwards4b committed Jan 3, 2023
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Commits on Jan 4, 2023

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Commits on Jan 6, 2023

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Commits on Jan 9, 2023

  1. Merge pull request ESCOMP#207 from jedwards4b/more_github_workflow

    code cleanup
    
    Description of changes
    
    Remove all gfortran warnings except unused-dummy-argument with the exception of the external fox code.
    Specific notes
    
    Contributors other than yourself, if any:
    
    CDEPS Issues Fixed ESCOMP#204
    
    Are there dependencies on other component PRs (if so list):
    
    Are changes expected to change answers (bfb, different to roundoff, more substantial): bfb
    
    Any User Interface Changes (namelist or namelist defaults changes): no
    
    Testing performed (e.g. aux_cdeps, CESM prealpha, etc): cesm prealphas on cheyenne with intel and gnu and updated github testing.
    
    Hashes used for testing: cesm2.3.beta11 + cmeps 2ded3b51bc9b2f545f9e157e56f108dff67b5bd4
    cdeps 7bd2b80
    jedwards4b authored Jan 9, 2023
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  2. rename master to main

    jedwards4b committed Jan 9, 2023
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  3. Merge pull request ESCOMP#208 from jedwards4b/master_to_main

    rename master to main
    jedwards4b authored Jan 9, 2023
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Commits on Jan 14, 2023

  1. the build in github was not consistant with that outside github, this…

    … commit is expected to fail
    jedwards4b committed Jan 14, 2023
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Commits on Jan 17, 2023

  1. Merge pull request ESCOMP#209 from jedwards4b/fix_gnu_debug_bld

    the build in github was not consistant with that outside github
    jedwards4b authored Jan 17, 2023
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Commits on Jan 30, 2023

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