2.14.1

Release Notes

For: uc-cdis/indexd

Notes since tag: 2.14.0

Notes to tag/commit: 22ad11c

Generated: 2020-11-16

Bug Fixes

• Fix bundle schema to support all hash types. (#298)
• Fix bundle POST endpoint to accept list of different types of checksums.
  (#298)
• Fix ga4gh/object GET endpoint to show list of checksums. (#298)

2.14.0

Release Notes

For: uc-cdis/indexd

Notes since tag: 2.13.0

Notes to tag/commit: 2.14.0

Generated: 2020-11-11

Improvements

• Records with an empty authz can now be updated by admins (#297)
• Return 400 instead of 409 in case of conflict (#289)

Bug Fixes

• fix overwriting of acl and authz fields to [] on POST to
  /index/blank/{guid} (#295)
• update updated_date when modifying record (#294)
• Fix 500 error when indexd blank endpoints are called without a body (#289)

New Features

• Added new get_with_nonstrict_prefix helper to index_driver. (#291)
• Updated /ga4gh/drs/v1/objects/<path:object_id> and
  /index/<path:object_id> GET endpoints to utilize this new method. (#291)
• Implemented dist endpoint and added unit test (#293)

2.13.0

Release Notes

For: uc-cdis/indexd

Notes since tag: 2.12.0

Notes to tag/commit: 4902aea

Generated: 2020-08-14

New Features

• Added Bundle endpoints. (#267)
• Added new table to store bundles. (#267)
• \index\ endpoint resolves bundle ids. (#267)
• Added form parameter top \index\ (without guid) to list either bundles,
  indexd records or both. (#267)
• DRS endpoint supports bundles. (#267)
• DRS endpoint supports expand parameter. (#267)
• Added tests for bundles. (#267)
• Updated tests for DRS and Indexd (#267)
• Remove presigned url from the access_url field in the drs object when
  authz is given. (#282)

Bug Fixes

• Fix ACL->authz migration script for "[ project, program ]" ACLs (#284)
• The object/<guid>/access/<access type> endpoint throws a 500 instead of a
  401 when the user is logged in but does not have access to the specific
  record. (#283)
• Added a general Fence Error handler when drs fails to catch error from
  fence (#283)

Improvements

• Black formatting on all files (#286)
• Ensure all files ends with one newline (#286)
• Add pre commit configuration for black, newlines, and detecting secrets
  (along with a secrets baseline) (#286)
• no trailing whitespace hook (#286)

Dependency Updates

• Add sqlalchemy-utils upper bound "<=0.36.6" in addition to ">=0.33.11"
  (#284)

authz field now supported in blank endpoints

2.12.0

PXP-6156 "authz" for blank endpoints (#280)

uploader not required for blank record creation

Release Notes

For: uc-cdis/indexd

Notes since tag: 2.10.0

Notes to tag/commit: 6c74920

Generated: 2020-05-26

Breaking Changes

• indexd blank record endpoints no longer require uploader field (#277)

Allow creating blank record with GUID

Release Notes

For: uc-cdis/indexd

Notes since tag: 2.9.0

Notes to tag/commit: 16c3e4f

Generated: 2020-05-26

New Features

• Add support for creating a new, blank version of a record through the POST
  /index/blank/{{GUID}} endpoint. (#271)

Update authz lib and blank guid authz handling

Release Notes

For: uc-cdis/indexd

Notes since tag: 2.8.0

Notes to tag/commit: 908c40d

Generated: 2020-05-21

Dependency Updates

• update gen3authz to latest version (#276)
• Pin authutils==4.0.0 in setup.py (#274)

New Features

• Test to check encoded slash works on both drs and drs access endpoint.
  (#273)
• Added auth info to DRS endpoint swagger. (#266)

Improvements

• creating blank records now allows using your access token for authz (#275)
• Prepend the configured prefix to new versions' GUIDs, unless a GUID has
  been provided by the user (#274)

Deployment Changes

• Indexd's blank record endpoints now allow direct iteration from a user with
  their access token but requires the file upload arborist role to be
  modified so the service is not just fence but instead * so indexd works
  too. see https://github.com/uc-cdis/commons-users/pull/908/files for
  example (#275)

DRS endpoints

Release Notes

For: uc-cdis/indexd

Notes since tag: 2.7.0

Notes to tag/commit: 2.8.0

Generated: 2020-03-17

New Features

• Implemented new DRS endpoints paths and parameters that follows the DRS
  spec https://ga4gh.github.io/data-repository-service-schemas/docs/#_paths
  (#261)
• Update swagger docs to include DRS (#261)
• Added unit tests for DRS endpoints (#261)

Improvements

• The "/versions" endpoint explicitly returns records in the order they were
  created (#263)

fix start did for pagination support

Release Notes

For: uc-cdis/indexd
Notes since tag: 2.6.2
Notes to tag/commit: 2.7.0
Generated: 2020-03-09

Bug Fixes

• keep existing behavior when using pagination using start did (instead of
  new page param), ordering by date causes issues with previous behavior, now
  only order by date when using new page param (#262)

2.6.2

Release Notes

For: uc-cdis/indexd

Notes since tag: 2.6.1

Notes to tag/commit: 2.6.2

Generated: 2020-02-17

Bug Fixes

• Fix an issue introduced in 2.0.0 that broke the "/_version" endpoint (#259)

Improvements

• Improve messages in Authz errors (#257)