v0.1.0

CalibrateEmulateSample v0.1.0

Closed issues:

• Tolerance for test (#1)
• Add Windows 32-bit build back in (#25)
• master is currently broken (#29)
• Remove Pkg.build() in GModel (#36)
• Improve the build (#39)
• Timestep for EKI (#56)
• SVD decomposition (#57)
• Noise learning bug in GP (#58)
• A series of Examples (#59)
• find_mcmc_step! modifies MCMCObj (#61)
• Insanely long precompile times. (#65)
• EKI.construct_initial_ensemble only accepts univariate priors (#66)
• Add Scikit-learn install into a build script for the Project (#68)
• Observations constructor modified given observation covariance (#71)
• Avoid unnecessary matrix inversions (#73)
• Use of JLD vs JLD2 (#75)
• API Documentation (#77)
• Docs link in "about"? (#80)
• Docs mention module EKI.jl but there's only EKP.jl (#81)
• Use EnsembleKalmanProcess rather than EKObj? (#82)
• Consistency in Rows/Columns/1d-arrays (#90)
• Sampler should infer a mean and covariance from EKP prior (#91)
• Incorrect instantiation of posterior ParameterDistribution in get_posterior (#93)
• Add documentation for adding unit-test, integration tests / examples, and documentation to package (#98)
• Add lorenz96 CES example (#99)
• Add End to End ClimateMachine.jl example (#100)
• How should examples track the CES package? (#103)
• Dealing with constraints (#104)
• LaTeX equation in documentation homepage isn't properly rendered (#116)
• Modular emulator interface (#119)
• Unit tests broken under Julia 1.7 due to RNG change (#121)
• Buildkite CI broken on staging branch (#125)
• EnsembleKalmanProcesses.jl v0.5 dependency breaks for me (#138)
• Add compat entries for all dependencies to main Project.toml (#152)

Merged pull requests:

• rename to Solus.jl, add NEKI (#2) (@simonbyrne)
• Add Lorenz 96 model to examples (#4) (@simonbyrne)
• Fix NEKI (#5) (@simonbyrne)
• Create .gitignore, ignore vim *.swp files (#6) (@dburov190)
• GPRWrap (#7) (@dburov190)
• Lorenz96 (#8) (@dburov190)
• Implement 'mmstd', 'plot_fit'; add tests (#9) (@dburov190)
• Histograms (#10) (@dburov190)
• Histograms (#11) (@dburov190)
• Fix package name (#12) (@charleskawczynski)
• Add Melanie's CES code - EKI, GPEmulator, MCMC, and Truth (#14) (@bielim)
• Add notebook demonstrating CES on Cloudy (#15) (@bielim)
• Update README, add bors.toml (#16) (@charleskawczynski)
• Switch to Travis and AppVeyor (#17) (@charleskawczynski)
• Try to fix CodeCov, config docs (#19) (@charleskawczynski)
• Try to fix docs (#20) (@charleskawczynski)
• Try to fix Bors (#21) (@charleskawczynski)
• Add Cloudy example to test (#22) (@charleskawczynski)
• Update index.md (#27) (@bielim)
• Dev CES.jl to docs (#28) (@charleskawczynski)
• Fix build (#31) (@charleskawczynski)
• Separate cloudy and improve CES (#32) (@bielim)
• Fix GPR example (#33) (@charleskawczynski)
• Remove GModel dependence on Cloudy (#35) (@charleskawczynski)
• Improve memory management & flow control with dispatch (#37) (@charleskawczynski)
• Normalize GP input (#42) (@bielim)
• Try to fix build (#43) (@charleskawczynski)
• Update Cloudy test and Cloudy notebook (#44) (@bielim)
• Add Dockerfile (#47) (@charleskawczynski)
• Switch to Github Action docker-based CI (#48) (@charleskawczynski)
• Fix org name (#50) (@charleskawczynski)
• Add unit tests (#51) (@bielim)
• Unit-tests with CI Update (#53) (@jakebolewski)
• Update README.md (#54) (@jakebolewski)
• Replace FreeParameters.jl with Priors.jl - 2nd Attempt (#55) (@bielim)
• Add timestep for EKI, and timestep finder function. (#60) (@ilopezgp)
• Extend tests for GPEmulator.jl and Observations.jl (#62) (@bielim)
• Add SVD functionality (#63) (@odunbar)
• Clean up CalibrateEmulateSample (#67) (@bielim)
• Update index.md (#69) (@bielim)
• WIP: Add Ensemble Kalman Sampler (#70) (@bielim)
• Substitute unnecessary matrix inversion, use linear solve instead. (#74) (@ilopezgp)
• Change code infrastructure to accommodate both EKI and EKS (#76) (@bielim)
• add mindmap link to README.md (#79) (@odunbar)
• Corrected EKS implementation (#83) (@agarbuno)
• Merge duplicate Ag/eks_imlplementation into original ag/eks-implementation (with new commits) (#84) (@odunbar)
• Update Tests.yml (#85) (@jakebolewski)
• Refactor: Parameter Distributions (#88) (@odunbar)
• WIP: replace Prior and posterior samples with ParameterDistributions (#89) (@odunbar)
• Update examples to work with the latest CES code (#94) (@bielim)
• More verbose naming (#95) (@odunbar)
• Adds LossMinimization folder and two examples (#96) (@sandreza)
• Adding L96 example (#101) (@mhowlan3)
• Data storage objects (#102) (@odunbar)
• CalibrateEmulateSample dependence on EnsembleKalmanProcesses (#106) (@odunbar)
• Create README.md (#108) (@odunbar)
• add buildkite setup to build examples (#109) (@jakebolewski)
• Regularization & standardization (#111) (@mhowlan3)
• build and deploy docs (#112) (@jakebolewski)
• build and deploy docs against master / bors branch (#113) (@jakebolewski)
• update julia to 1.5.4, check if precompilation issues are fixed (#114) (@jakebolewski)
• Update bors.toml (#117) (@odunbar)
• Modular emulator interface (#120) (@odunbar)
• Use EKP.jl 0.2.0 & pass explicit RNG object where used (#122) (@tsj5)
• Miscellaneous cleanup of warnings; formatting (#123) (@tsj5)
• Add preconditioned Crank-Nicholson method for MCMC sampling (#124) (@tsj5)
• Standardize on julia 1.6.x (#126) (@tsj5)
• Standardize on Julia 1.6.2 (#127) (@tsj5)
• Update examples to use Emulator interface (#129) (@tsj5)
• [WIP] Modular Sampler interface (#130) (@tsj5)
• Substitute types with abstractions (#132) (@tsj5)
• Use EKP.jl 0.5.x (#135) (@tsj5)
• Update README.md (#137) (@odunbar)
• Update docs: initial page updates (#139) (@odunbar)
• Fix CI (#140) (@charleskawczynski)
• Update to EKP 0.8 - CI checks (#142) (@odunbar)
• GP bug for noise_learn = false underprediction of uncertainty (#143) (@odunbar)
• Emulator/Data processing docs (#144) (@odunbar)
• Standardize notation with EKP, add Glossary (#147) (@ilopezgp)
• Clean docs, examples and docstrings (#148) (@pitmonticone)
• Add calibration docs. (#149) (@ilopezgp)
• Add JuliaFormatter, up to 1.7.3 (#150) (@ilopezgp)
• Add compat helper, tag bot (#151) (@ilopezgp)
• Add compat entries for dependencies (#153) (@ilopezgp)
• Move workflows to their directory (#154) (@ilopezgp)
• Add missing compatibilities (#155) (@ilopezgp)
• LICENSE (#156) (@odunbar)
• julia ^1.6, EKP ^0.8 (#157) (@odunbar)
• Add python dependencies (#162) (@ilopezgp)