Releases: cBioPortal/cbioportal
Releases · cBioPortal/cbioportal
v5.4.2
🐛 Bug Fixes
- (JSP) Fix broken global parameter @dippindots (#10381)
- Fix disabling SSL for MySQL connection @pvannierop @dippindots (#10353)
- search returns false for bad regex @jfkonecn (cbioportal-frontend#4719)
📘 Documentation
- Update faq.md @jagnathan (#10380)
👷♀️ Testing, Configuration & Deployment
- Update google analytics implementation @alisman (cbioportal-frontend#4718)
🖊️ Data Importer & Validator
- Improve validation of Entity Stable ID @oplantalech (#10365)
- Fixed an error in naming alleles for the mutation file checks in SNP, DNP, and TNP @sowmiyaa-kumar (#10235)
🧰 Maintenance
- Update yarn lock file @dippindots (cbioportal-frontend#4722)
- Bump semver from 5.6.0 to 5.7.2 @dependabot (cbioportal-frontend#4664)
- Bump word-wrap from 1.2.3 to 1.2.4 @dependabot (cbioportal-frontend#4668)
🕵️♀️ Full commit logs
- Backend: v5.4.1...v5.4.2
- Frontend: cBioPortal/cbioportal-frontend@v5.4.1...v5.4.2
🏷Notes on versioning and release procedure
https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning
Contributors
alisman, pvannierop, and 6 other contributors
Assets 2
0
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v5.4.1
🧬 Features
- Add higher granularity CNA charts on Study View @h164654156465 (cbioportal-frontend#4706)
✨ Enhancements
- Add property to define custom sample type colors in patient view @BasLee (cbioportal-frontend#4704)
- Improve non-profiled gene panel links in oncoprint tooltip @BasLee (cbioportal-frontend#4701)
- Fix hidden non-genomic data when excluding VUS in oncoprint @BasLee (cbioportal-frontend#4712)
- Extend sample type colors in patient view @BasLee (cbioportal-frontend#4679)
🏎 Performance Tweaks
- Reduce loading time for mutations table in comparison page @gblaih (cbioportal-frontend#4714)
👷♀️ Testing, Configuration & Deployment
- Update API clients and fix screenshots after Oncobk update @alisman (cbioportal-frontend#4715)
- Add e2e tests for Interactive Web Tour @Beking0912 (cbioportal-frontend#4700)
- Add json prop for custom patient view sample type colors @BasLee (#10336)
🕵️♀️ Full commit logs
- Backend: v5.4.0...v5.4.1
- Frontend: cBioPortal/cbioportal-frontend@v5.4.0...v5.4.1
🏷Notes on versioning and release procedure
https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning
v5.4.0
✨ Enhancements
- Enhancements to patient page @kalletlak (cbioportal-frontend#4695)
👷♀️ Testing, Configuration & Deployment
- Update mysql 8 connection string for localdb tests @dippindots (cbioportal-frontend#4710)
- Configure database connection via db.connection_string param @pvannierop (#10037)
📘 Documentation
🕵️♀️ Full commit logs
- Backend: v5.3.19...v5.4.0
- Frontend: cBioPortal/cbioportal-frontend@v5.3.19...v5.4.0
🏷Notes on versioning and release procedure
https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning
v5.3.19
🧬 Features
- Add Interactive Web Tour for Virtual Studies and Group Comparison @Beking0912 (cbioportal-frontend#4687)
🐛 Bug Fixes
- Replace twitter with news feed @alisman (cbioportal-frontend#4685)
⚙️ REST API Changes
- (GSoC) Generic Assay Categorical/Binary data implementation Backend @Djokovic0311 (#10303 #10335)
📘 Documentation
- Add Data Release News for Aug 15th @sbabyanusha (#10328)
👷♀️ Testing, Configuration & Deployment
- Fix e2e tests that use study view charts button @gblaih (cbioportal-frontend#4698)
- update screenshots after addition of ancestry data @alisman (cbioportal-frontend#4697)
- Update jitpack-build for pre-release @dippindots (cbioportal-frontend#4696)
- Add
show_web_toursfor Interactive Web Tour @Beking0912 (#10333)
🕵️♀️ Full commit logs
- Backend: v5.3.18...v5.3.19
- Frontend: cBioPortal/cbioportal-frontend@v5.3.18...v5.3.19
🏷Notes on versioning and release procedure
https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning
v5.3.18
🐛 Bug Fixes
- Fix pathway table page reset issue @gorkemsolun (cbioportal-frontend#4678)
- bug fix: case no meta data from mutational signatures endpoint @TJMKuijpers (cbioportal-frontend#4692)
- Fix mutated and total profiled patient counts in comparison mutations table and lollipop tooltip @gblaih (cbioportal-frontend#4691)
👷♀️ Testing, Configuration & Deployment
- Adding jitpack build script and label check test for pull request @dippindots (#10329 cbioportal-frontend#4688)
- Add data access token user role filter feature @kalletlak (#10315)
- Add defaults for genomic evolution tab in patient view @BasLee (#10309 cbioportal-frontend#4680 cbioportal-frontend#4694)
📘 Documentation
- Update About-Us.md @ritikakundra (#10196)
🕵️♀️ Full commit logs
- Backend: v5.3.17...v5.3.18
- Frontend: cBioPortal/cbioportal-frontend@v5.3.17...v5.3.18
🏷Notes on versioning and release procedure
https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning
v5.3.17
✨ Enhancements
- Update q value banner language and placement @alisman (cbioportal-frontend#4683)
👷♀️ Testing, Configuration & Deployment
- Update screenshots @alisman (cbioportal-frontend#4684)
- Fix color chooser e2e test after update to group pill style @alisman (cbioportal-frontend#4681)
⚙️ REST API Changes
- Genomic data counts study-view endpoint @h164654156465 (#10300)
📘 Documentation
- Update two-sided fisher tests news @dippindots (#10312)
- Update about us page @dippindots (#10292)
🧰 Maintenance
- Add a banner announcing introduction of two-sided exact test @alisman (cbioportal-frontend#4682)
- Update pathway mapper version to 2.3.0 @onursumer (cbioportal-frontend#4631)
📐 Prototype (Internal Use)
- RFC68: Impl. structural variants table in Study View @pvannierop (cbioportal-frontend#4577)
- Feature to visualize mutational counts for mutational signatures @TJMKuijpers (cbioportal-frontend#4540)
🕵️♀️ Full commit logs
- Backend: v5.3.16...v5.3.17
- Frontend: cBioPortal/cbioportal-frontend@v5.3.16...v5.3.17
🏷Notes on versioning and release procedure
https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning
v5.3.16
✨ Enhancements
- Persist text color on icon in group comparison buttons @zhx828 (cbioportal-frontend#4663)
- Add VEP link in reVUE tooltip @leexgh (cbioportal-frontend#4661)
- Two sided fishers test @gblaih (#10288)
- Cache treatment endpoints @kalletlak (#10282)
🐛 Bug Fixes
- Fix Study view charts layout reset on any operation @kalletlak (cbioportal-frontend#4674)
- Allow Redis service unavailable when Redis is enabled @dippindots (#10305)
👷♀️ Testing, Configuration & Deployment
- Fix api clients and update screenshot after gene update @alisman (cbioportal-frontend#4675)
🧰 Maintenance
- Update Genome Nexus API clients @leexgh (cbioportal-frontend#4676)
📐 Prototype (Internal Use)
- Add custom url handling for resource tab iframes (enables state persistence for Minerva viewer) @alisman (cbioportal-frontend#4673)
🕵️♀️ Full commit logs
- Backend: v5.3.15...v5.3.16
- Frontend: cBioPortal/cbioportal-frontend@v5.3.15...v5.3.16
🏷Notes on versioning and release procedure
https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning
v5.3.15
✨ Enhancements
- Set download button visibility in UI based on user role/group @kalletlak (#10254)
🐛 Bug Fixes
👷♀️ Testing, Configuration & Deployment
- Adjust e2e spec after change in number of genes @alisman (cbioportal-frontend#4671)
- Restore skipped annotation-filter-menu specs @BasLee (cbioportal-frontend#4658)
🧰 Maintenance
- Update API docs @dippindots (cbioportal-frontend#4666)
🕵️♀️ Full commit logs
- Backend: v5.3.14...v5.3.15
- Frontend: cBioPortal/cbioportal-frontend@v5.3.14...v5.3.15
🏷Notes on versioning and release procedure
https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning
v5.3.14
🧬 Features
- Add mutations table and fisher exact two-sided p value to comparison lollipop @gblaih (cbioportal-frontend#4556)
✨ Enhancements
- ✨ Add Time Range Selection to KM Plots on Study View @haynescd (cbioportal-frontend#4645)
- modify documentation for skin.hide_download_controls @h164654156465 (#10258)
🐛 Bug Fixes
- Fix index page with unauthorized studies: only fetch study tags from authorized studies @BasLee (cbioportal-frontend#4653)
- fix 10221 - 403 issue; authentication object is obtained from Security Context. @jagnathan (#10267)
👷♀️ Testing, Configuration & Deployment
- Option to disable data download but still allow figure download @h164654156465 (cbioportal-frontend#4662)
- Update seedDB url for localdb test @dippindots (cbioportal-frontend#4665)
- Update screenshots @alisman (cbioportal-frontend#4660)
- Update e2e after data update @alisman (cbioportal-frontend#4659)
- Update download control options @kalletlak (#10264)
🏎 Performance Tweaks
- Improve study-view treatment api's performance @kalletlak (#10261)
⚙️ REST API Changes
- RFC68: Impl. structural variant filtering in Study View filter @pvannierop (#10214)
🧰 Maintenance
- Update Pyyaml package @dippindots (#10283)
🕵️♀️ Full commit logs
- Backend: v5.3.13...v5.3.14
- Frontend: cBioPortal/cbioportal-frontend@v5.3.13...v5.3.14
🏷Notes on versioning and release procedure
https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning
v5.3.13
✨ Enhancements
- Improve tooltips for Altered and Unaltered group columns on comparison page #9718 @h164654156465 (cbioportal-frontend#4649)
🐛 Bug Fixes
- Fix duplicate SV intragenic records in Mutations tab @fuzhaoyuan (cbioportal-frontend#4650)
- Fix case list selection for multi study queries @alisman (cbioportal-frontend#4648)
👷♀️ Testing, Configuration & Deployment
- Fix e2e tests for backend sv_counts_endpoint PR @BasLee (cbioportal-frontend#4647)
- Create property to show reference genome in study list @oplantalech (#10233)
⚙️ REST API Changes
- RFC68: Impl. Struct Var count endpoint for Study View @pvannierop (#10119)
🧰 Maintenance
- Update api clients @alisman (cbioportal-frontend#4651)
🕵️♀️ Full commit logs
- Backend: v5.3.12...v5.3.13
- Frontend: cBioPortal/cbioportal-frontend@v5.3.12...v5.3.13
🏷Notes on versioning and release procedure
https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning
