v6.0.24

✨ Enhancements

• Clindata filter follow up @fuzhaoyuan (cbioportal-frontend#4909)
• Improve Homepage Search: Automatically Hide Dropdown on Typing @GarvitDadheech (cbioportal-frontend#4953)
• Defer loading of gene panel data until plots tab is shown @alisman (cbioportal-frontend#5087)
• Add truncation of timeline label @jCHENEBY (cbioportal-frontend#4990)

🐛 Bug Fixes

• Fix genie api page error @gblaih (#11336)
• Fix sv tab genome nexus client @fuzhaoyuan (cbioportal-frontend#5045)
• On Study View sort structural variant table by sample count @alisman (cbioportal-frontend#5046)
• Update function logScalePossible for generic assay negative data @TJMKuijpers (cbioportal-frontend#5084)
• Bugfix/hide empty tab @Nelliney (cbioportal-frontend#4969)
• Fix log scale breaking box plot in plots tab @gblaih (cbioportal-frontend#5079)

🧰 Maintenance

• Upgrade to spring boot 3.4 @gblaih (#11318)
• Update api client @dippindots (cbioportal-frontend#5082)

🏎 Performance Tweaks

• Make XY plot data cacheable @onursumer (#11278)
• Reduce api calls for generic assay meta in study view page @dippindots (cbioportal-frontend#5019)

🧹 Cleanup & Refactoring 🔧

• Removed Heroku references @thepiyush-303 (cbioportal-frontend#5088)

⚙️ REST API Changes

• Fix genie api page error @gblaih (#11336)

📘 Documentation

• Update News-Genie.md @sbabyanusha (#11326)
• Fix the broken link on the ER Diagram page in docs @chandrikarj (#11309)

👷‍♀️ Testing, Configuration & Deployment

• Modified config service API response to return correct data type @arishta (#11323)
• add security status badge @zainasir (#11335)
• Improved logging for security tests on circleci @zainasir (#11332)
• Improve circleci tests with reusable docker images @zainasir (#11328)
• Bin merge test & input validation @fuzhaoyuan (#11275)
• Upgrade circleci config version and improve api/security tests @zainasir (#11325)
• Integrate Docker Scout as part of security tests. @zainasir (#11324)
• fixes e2e tests to use CANCER_TYPE rather than tumor type @rishisulakhe (cbioportal-frontend#5077)
• Update screenshots for timeline @alisman (cbioportal-frontend#5085)
• Fix screenshots. Update test. Update api clients @alisman (cbioportal-frontend#5081)
• fix localdb servdist @alisman (cbioportal-frontend#5080)
• update screenshost after gene table update @inodb (cbioportal-frontend#5076)

🕵️‍♀️ Full commit logs

• Backend: v6.0.23...v6.0.24
• Frontend: cBioPortal/cbioportal-frontend@v6.0.23...v6.0.24

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning

v6.0.23

🧬 Features

• Opt-In Clickhouse mode of study view @alisman (#11224, cbioportal-frontend#5069)

✨ Enhancements

• Change file and links name to resource displayName @hweej (cbioportal-frontend#5061)
• Improve Parsing of Custom Selection @anshuman-rai-27 (cbioportal-frontend#5064)
• Add gene column in the Mutations table @arishta (cbioportal-frontend#5049)
• Show gene search icon on row hover @arishta (cbioportal-frontend#5059)

🐛 Bug Fixes

• Fix download button in clinical tab @arishta (cbioportal-frontend#5058)
• Use NP instead of NS for Mutations in Download tab @arishta (cbioportal-frontend#5057)

📘 Documentation

• Update Redis config source reference @emmanuel-ferdman (#11145)
• Add documentation for quick select on homepage @sowmiyaa-kumar (#10452)
• Update file paths in data import scripts documentation @zainasir (#11305)
• Add documentation for cBioPortal security measures. @zainasir (#11300)
• Update News.md @sbabyanusha (#11295)
• Add donate button config instructions @inodb (#11286)

👷‍♀️ Testing, Configuration & Deployment

• fix typo in github dependency graph action @zainasir (#11303)
• update github dependency graph with docker builds @zainasir (#11302)
• automate jitpack build and frontend version update for new releases @zainasir (cbioportal-frontend#5067)
• Update localdb screenshots @alisman (cbioportal-frontend#5068)

🕵️‍♀️ Full commit logs

• Backend: v6.0.22...v6.0.23
• Frontend: cBioPortal/cbioportal-frontend@v6.0.22...v6.0.23

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning

v6.0.22

✨ Enhancements

• add donate button @inodb (cbioportal-frontend#5065)
• Group comparison view: update boxplot info in clinical tab @TJMKuijpers (cbioportal-frontend#4924)

🐛 Bug Fixes

• Fix full data download failing with pie chart in study view @gblaih (#11239)

👷‍♀️ Testing, Configuration & Deployment

• eliminate code issues in jitpack github workflow @zainasir (cbioportal-frontend#5056)
• fix release-management workflow @zainasir (cbioportal-frontend#5054)
• add trigger for modified labels @zainasir (cbioportal-frontend#5053)

📘 Documentation

• Fix seed database commands in docs @VenkateshVishwas (#11279)
• Add property for donate button configuration @alisman (#11284)
• add donate page to docs @inodb (#11282)
• Update news about GDC Target studies @sbabyanusha (#11269)
• Adds documentation for managing keycloak instance via API @hweej (#11264)
• Improve data loading docs @pieterlukasse (#11251)
• Fix typo in feature-development-guide.md @vaibhavlachhwani (#11242)
• Fix broken links in cBioPortal-ER-Diagram.md @vaibhavlachhwani (#11243)

🕵️‍♀️ Full commit logs

• Backend: v6.0.21...v6.0.22
• Frontend: cBioPortal/cbioportal-frontend@v6.0.21...v6.0.22

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning

v6.0.21

🧬 Features

• Rfc85 dynamic virtual study @forus (#11040)
• Implement RFC85 Dynamic Virtual Study @forus (cbioportal-frontend#5016)
• Add alphaMissense in functional impact column @leexgh (cbioportal-frontend#5042)

✨ Enhancements

• Add description to top of resource tab on patient view @Nelliney (cbioportal-frontend#4964)

🐛 Bug Fixes

• Fix sample/study counter in VS description @forus (cbioportal-frontend#5028)
• Fix Sift and Polyphen blank in NRAS @leexgh (cbioportal-frontend#5039)

👷‍♀️ Testing, Configuration & Deployment

• add retry logic for 404 errors @zainasir (cbioportal-frontend#5040)
• Update localdb test @dippindots (cbioportal-frontend#5048)

📘 Documentation

• Add setup guide for Kubernetes deployment @zainasir (#11232)
• Add gget CLI client to docs @inodb (#11035)
• Add instructions for accessing frontend on localhost with a self-signed certificate @yashhash2 (#11075)
• Add AlphaMissense news @leexgh (#11202)
• Add Mutation Assessor v4 news @leexgh (#11148)
• Add ICI note to chromoscope news @inodb (#11164)

🧹 Cleanup & Refactoring 🔧

• Remove unused noauthsessionservice property @nbentoneves (#11169)

🕵️‍♀️ Full commit logs

• Backend: v6.0.20...v6.0.21
• Frontend: cBioPortal/cbioportal-frontend@v6.0.20...v6.0.21

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning

v6.0.20

🐛 Bug Fixes

• Modify fetch resources from single study to multi-study @hweej (cbioportal-frontend#5038)

🏎 Performance Tweaks

• On Study View handle larger number of resource files @hweej (cbioportal-frontend#5034)

📘 Documentation

• Add Chromoscope News @inodb (#11133)

🕵️‍♀️ Full commit logs

• Backend: v6.0.19...v6.0.20
• Frontend: cBioPortal/cbioportal-frontend@v6.0.19...v6.0.20

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/development/release-procedure#a-note-on-versioning

v6.0.19

🐛 Bug Fixes

• 🔒 Update Default Filter Chain Ordering for Spring Security @haynescd (#11153)
• Fix cache annotation resource data @inodb (#11152)

🎨 Style Tweaks

• Add Mutation Assessor V4 available date on tooltip @leexgh (cbioportal-frontend#5037)

👷‍♀️ Testing, Configuration & Deployment

• Update CGDS and force keycloak db to mysql 5 @haynescd (cbioportal-frontend#5036)

🕵️‍♀️ Full commit logs

• Backend: v6.0.18...v6.0.19
• Frontend: cBioPortal/cbioportal-frontend@v6.0.18...v6.0.19

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/development/release-procedure#a-note-on-versioning

v6.0.18

✨ Enhancements

• Update StudyAgreement.tsx @alisman (cbioportal-frontend#5030)
• Custom data Enhancements for Plots Tab @Nelliney (cbioportal-frontend#4994)

🐛 Bug Fixes

• Fix Mutations Lollipop Tool Tip Info to await promise before retrieving patient counts @haynescd (cbioportal-frontend#5033)

⚙️ REST API Changes

• Add resource-data-all endpoint and MyBatis SQL methods @hweej (#11051)

📘 Documentation

• Update OS/PFS FAQ @tmazor (#11123)
• add name to team @zainasir (#11121)
• Update News-Genie.md @sbabyanusha (#11088)
• Update News.md @sbabyanusha (#11042)
• updated the hyve team and alumni in about-us @zeynepkaragoz (#11038)

👷‍♀️ Testing, Configuration & Deployment

• update screenshots @alisman (cbioportal-frontend#5022)

📦 Package Improvements

• API client update about Mutation Assessor v4 data and UI changes @leexgh (cbioportal-frontend#5015)

🕵️‍♀️ Full commit logs

• Backend: v6.0.17...v6.0.18
• Frontend: cBioPortal/cbioportal-frontend@v6.0.17...v6.0.18

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning

v6.0.17

✨ Enhancements

• Enhancement/files and links @Nelliney (cbioportal-frontend#4995)

🐛 Bug Fixes

• Resolve KM plot censored event bug and add caching @kalletlak (#11027)

📘 Documentation

• Update News.md @sbabyanusha (#11029)

🕵️‍♀️ Full commit logs

• Backend: v6.0.16...v6.0.17
• Frontend: cBioPortal/cbioportal-frontend@v6.0.16...v6.0.17

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning

v6.0.16

🧬 Features

• Add ability to spawn code notebooks from cBioPortal queries @gautamsarawagi (cbioportal-frontend#4856)

✨ Enhancements

• Require login for custom data @Nelliney (cbioportal-frontend#5003)
• Add Patient and Sample Resources to Study View @Nelliney (cbioportal-frontend#4961)
• Add organoid icon and color on Patient View @inodb (cbioportal-frontend#4963)

🐛 Bug Fixes

• Add missing study view filters for clinical data binning @onursumer (#11007)
• Fixed outdated keycloak docker image @ugurkoysuren (#10908)
• fix frontendproperties readFile() to work with classpath and update download_custom_buttons_json reference @pappde (#10946)
• Add oncoprint gap mode to hide percentages @alisman (cbioportal-frontend#4997)
• Gracefully fail when mutsig missing meta data @alisman (cbioportal-frontend#5000)
• CustomButtons: fix studyName missing when viewing under ResultsViewPage @pappde (cbioportal-frontend#4982)

🎨 Style Tweaks

• Refinements to jupyter modal #10949 @gautamsarawagi (cbioportal-frontend#4968)

👷‍♀️ Testing, Configuration & Deployment

• Update screenshots and api clients @alisman (cbioportal-frontend#4967)

📘 Documentation

• Fix "Feature development guide" link @pozhidaevak (#11010)
• Update News for RFC87 @pappde (#10941 #10990)
• Docker: improve instructions for testing the backend with docker @pappde (#10953)
• Deployment/Customization Docs: changed links to relative so they work both in github website and docs website @pappde (#10938)
• Fix Datahub link in FAQ @jamesqo (#10931)

🧰 Maintenance

• move async to async migration home.spec.js mutation-mapper-tool.spec.… @bemijonathan (cbioportal-frontend#4950)
• application.properties: add new property to enum and config_service @pappde (#10942)

🕵️‍♀️ Full commit logs

• Backend: v6.0.15...v6.0.16
• Frontend: cBioPortal/cbioportal-frontend@v6.0.15...v6.0.16

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning

v6.0.15

🧬 Features

• RFC87: add button to load GroupComparison table data in external tool @pappde (cbioportal-frontend#4938 #10921)

📘 Documentation

• add mutational signatures to news @tmazor (#10930)
• Fix broken link in FAQ @jamesqo (#10924)
• Add NCI-CRDC TCGA and CPTAC studies to news release @rmadupuri (#10910)
• Update FAQ for Upcoming GDC Data Release @jamesqo (#10894)
• Update docker compose related documentation @dippindots (#10939)

🧰 Maintenance

• fix localStorage.frontendConfig being clobbered when localhost:3000 testing @pappde (cbioportal-frontend#4955)

👷‍♀️ Testing, Configuration & Deployment

• Fix docker compose deprecation issue @dippindots (#10939)

📦 Package Improvements

• Update Genome Nexus API client to include Alpha Missense @leexgh (cbioportal-frontend#4962)

🕵️‍♀️ Full commit logs

• Backend: v6.0.14...v6.0.15
• Frontend: cBioPortal/cbioportal-frontend@v6.0.14...v6.0.15

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning