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sage-bootstrap: update cryptographic hashes #37726

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merged 22 commits into from
May 25, 2024

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faisalfakhro
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@faisalfakhro faisalfakhro commented Apr 2, 2024

Update cryptographic hashes to use sha256 instead of sha1 due to insecurity of sha1.

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github-actions bot commented Apr 19, 2024

Documentation preview for this PR (built with commit 4044324; changes) is ready! 🎉
This preview will update shortly after each push to this PR.

@mkoeppe mkoeppe requested a review from vbraun April 19, 2024 20:41
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roed314 commented Apr 20, 2024

LGTM.

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mkoeppe commented Apr 20, 2024

Thanks very much @faisalfakhro for preparing this PR, and @roed314 for the review.

@vbraun, could you give this PR priority in merging please? It will conflict with any PRs doing package upgrades.

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faisalfakhro commented Apr 21, 2024

Apologies for not getting back to this, thanks for finishing it @mkoeppe . Just something I noticed while working on this PR: the unit tests in build/test seem to give several failures and errors (testing on the develop branch). I guess it probably warrants a separate issue but just wanted to check I wasn't missing something. For example, from SAGE_ROOT/build , running python3 -m unittest test/test_tarball.py gives a failure of the test_checksum test.

Similarly, running the tests in build/test/test_package_cmdline.py (deleting line 24 in test_package_cmdline.py, which causes a runtime error if left in since the variable MIRRORLIST_FILENAME doesn't seem to exist) I get failures for the test_create and test_fix_checksum tests.

I'll note that the test failures seem to stem from issues with the unit tests themselves (mostly expected stdout outputs in the unit tests not quite matching the correct outputs, or old variables being used from other files that no longer exist) rather than issues in sage_bootstrap (with the possible exception of issues with some commands in sage_bootstrap/cmdline.py , although I'm not certain).

Also will note that in this PR I did not update test_package_cmdline.py to include sha256 (in lines 170-173) since I couldn't get this test to work regardless. In particular creating the tarball with the command line tool (lines 152-161) doesn't seem to work.

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mkoeppe commented Apr 21, 2024

the unit tests in build/test seem to give several failures and errors (testing on the develop branch). I guess it probably warrants a separate issue

Yes, we have neglected these unit tests a bit in the past.
Fixing it in a follow-up PR would be a valuable contribution!

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vbraun commented Apr 24, 2024

merge conflict

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faisalfakhro commented Apr 25, 2024

Merge conflicts were due to new package version updates (for the following packages: onetbb, papilo, pyscipopt, scip, scip_sdp, soplex) on @vbraun 's branch (from #37494 ) . I've now updated those checksums so that the values are correct for the new versions, and the conflict was just from deleting the md5/cksum and inserting the sha256. so it should be fine to accept incoming changes to resolve.

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roed314 commented Apr 29, 2024

I've merged #37277 and #37810, which are already on the Release Manager's branch, to preempt merge conflicts.

Thanks!

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mkoeppe commented May 5, 2024

@vbraun Let's merge this please.

To merge on top of yet more conflicting upgrade PRs, merge with -Xours and then run ./sage --package download --allow-upstream :all: && ./sage --package fix-checksum :all:, which will put in the sha256 hashes.

vbraun pushed a commit to vbraun/sage that referenced this pull request May 12, 2024
    
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Update cryptographic hashes to use sha256 instead of sha1 due to
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- Fixes sagemath#37691
- Fixes sagemath#37558, see also
sagemath#36677 (comment)

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Update cryptographic hashes to use sha256 instead of sha1 due to
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Update cryptographic hashes to use sha256 instead of sha1 due to
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Update cryptographic hashes to use sha256 instead of sha1 due to
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- Fixes sagemath#37558, see also
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Update cryptographic hashes to use sha256 instead of sha1 due to
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Update cryptographic hashes to use sha256 instead of sha1 due to
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- Fixes sagemath#37558, see also
sagemath#36677 (comment)

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Update cryptographic hashes to use sha256 instead of sha1 due to
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- Fixes sagemath#37691
- Fixes sagemath#37558, see also
sagemath#36677 (comment)

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Update cryptographic hashes to use sha256 instead of sha1 due to
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- Fixes sagemath#37558, see also
sagemath#36677 (comment)

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vbraun pushed a commit to vbraun/sage that referenced this pull request May 24, 2024
    
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For this upgrade we tighten the check for GMP so that 6.2.1 is accepted
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URL: sagemath#37203
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vbraun pushed a commit to vbraun/sage that referenced this pull request May 24, 2024
…-buster-gcc_spkg` from CI

    
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- Fixes sagemath#38006 @jhpalmieri
- `gcc` does not build on `debian-buster` (which we supported via
`-gcc_spkg` because it is LTS until 2024-06), so we drop this platform
now; see sagemath#32074.

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vbraun pushed a commit to vbraun/sage that referenced this pull request May 24, 2024
…s with working libtool

    
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These fix the build on macOS, as discussed in sagemath#38020.

Test run:
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@vbraun vbraun merged commit 3ca2d09 into sagemath:develop May 25, 2024
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