v6.0.12

🐛 Bug Fixes

• Fix submission of patient and sample ids @alisman (#4943)

👷‍♀️ Testing, Configuration & Deployment

• Fix flaky e2e test on patient view line chart @gblaih (#4947)
• Fix e2e tests after microbiome generic assay removed @alisman (#4946)
• Update screenshots after oncokb data and clinical data tab column change @gblaih (#4940)

🧰 Maintenance

• Always show the mutation aligner link for domains @onursumer (#4942)
• Do not use proxy to fetch news @onursumer (#4941)
• WSL setup updates - readme and gitignore for Visual Studio @pappde (#4945)
• Regenerate api clients @alisman (#4944)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.0.11...v6.0.12
• Frontend: v6.0.11...v6.0.12

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v6.0.11

🐛 Bug Fixes

• Fix mutational sig bug @TJMKuijpers (#4930)

🧰 Maintenance

• Move 'juice' inside cbioportal-frontend-commons @leexgh (#4936)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.0.10...v6.0.11
• Frontend: v6.0.10...v6.0.11

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v6.0.10

✨ Enhancements

• Mutational Signature Improvements @alisman (#4916)

🐛 Bug Fixes

• Fix swapping generic assay profiles in comparison view @MatthijsPon (#4922)

📘 Documentation

• add splice mention to oncoprinter docs @inodb (#4935)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.0.9...v6.0.10
• Frontend: v6.0.9...v6.0.10

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v6.0.9

⚙️ Changes to handle external APIs

• Update Genome Nexus API model and reVUE reference to fit new model @leexgh (#4919)

👷‍♀️ Testing, Configuration & Deployment

• Remove demo-rfc72 reference from local e2e test @dippindots (#4928)
• refactored test cases to use async and await @bemijonathan (#4918)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.0.8...v6.0.9
• Frontend: v6.0.8...v6.0.9

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v6.0.8

🐛 Bug Fixes

• Fix LazyMobXTable countHeader when only has 1 page @fuzhaoyuan (#4911)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.0.7...v6.0.8
• Frontend: v6.0.7...v6.0.8

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v6.0.7

🐛 Bug Fixes

• Study page clinical data tab: fix download after pagination change @alisman (#4912)
• Show all survival attributes and remove duplicates in study clinical data tab @gblaih (#4883)

👷‍♀️ Testing, Configuration & Deployment

• Update screenshots after data change and update to paginated clinical data table @alisman (#4910)
• Fix error logs not displaying error response @gblaih (#4904)

🧰 Maintenance

• Update ts clients and code based on changes to treatment endpoints (moved to internal) @alisman (#4908)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.0.6...v6.0.7
• Frontend: v6.0.6...v6.0.7

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v6.0.6

🧬 Features

• Mutation pie chart and multi-selection table @7xuanlu (#4794)
• Remove feature flag for categorical generic assay group comparison @dippindots (#4894)

✨ Enhancements

• set showNA to false by default @olzhasmukayev (#4876)
• ✨New Feature: Remove Gene Tracks from Oncoprint @SAHU-01 (#4861)
• Paginated download of data for Clinical Data tab in Study View @pvannierop (#4786)

🐛 Bug Fixes

• Fixed png download for group comparison clinical data @khaledfahmy123 (#4888)
• Fix issue with sv tab sending large list of mutations for annotation @gblaih (#4885)
• Fix newsletter button @SURAJ-SHARMA27 (#4890)
• Fix getting molecular profile ids from key @kalletlak (#4899)

🎨 Style Tweaks

• fix menu stretch in long confirmation messages @mhsh312 (#4892)
• add banner for newsletter @alisman (#4886)

👷‍♀️ Testing, Configuration & Deployment

• update screenshot after intro of plots tab to studyview @alisman (#4884)

📘 Documentation

• Update README with instructions for installing e2e deps after WDIO 7.0 upgrade @alisman (#4889)

🧰 Maintenance

• Update ts clients based fixed mutation data count signature @alisman (#4903)
• Upgrade webdriver.io to v7 and begin migration of tests from sync to asyn @alisman (#4846)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.0.5...v6.0.6
• Frontend: v6.0.5...v6.0.6

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v6.0.5

🧬 Features

• Add plots tab to study view @gblaih (#4802)
• Study view custom sample selection with multi study @7xuanlu (#4867)

✨ Enhancements

• Added select all button and remove all button for columns on SV data @olzhasmukayev (#4872)
• Added button to open iframe source @khaledfahmy123 (#4874)

🎨 Style Tweaks

• fix the padding on the new section @olzhasmukayev (#4880)

👷‍♀️ Testing, Configuration & Deployment

• Update url navigation for e2e tests to first go to blank page @gblaih (#4860)
• Update to remove legacy db properties @haynescd (#4873)
• 🔧 Update keycloak image to quay.io @haynescd (#4869)

🧰 Maintenance

• Update api clients after change for mutation data filter @alisman (#4875)

🧰 Maintenance

• 🔧 Update keycloak image to quay.io @haynescd (#4869)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.0.4...v6.0.5
• Frontend: v6.0.4...v6.0.5

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v6.0.4

🐛 Bug Fixes

• Fix surivival chart for large cohort label overlap (number at risk) @TJMKuijpers (#4833)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.0.3...v6.0.4
• Frontend: v6.0.3...v6.0.4

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v6.0.3

🧬 Features

• Adding Customizable Custom Driver Column to Mutation, CNA, and SV Table @7xuanlu (#4840)

✨ Enhancements

• Adding Customizable Custom Driver Column to Mutation, CNA, and SV Table @7xuanlu (#4840)
• 🔨Refactor code: retrieve ndex tooltip information dynamically @SAHU-01 (#4847)

🐛 Bug Fixes

• PR for issue #10669 number at risk table @TJMKuijpers (#4862)
• Fix issue with genie download tab loading slow @gblaih (#4863)
• Fix: previous filters deselection upon each 'Select All' click @khaledfahmy123 (#4854)

👷‍♀️ Testing, Configuration & Deployment

• Fix localdb tests on the backend @gblaih (#4853)
• Update screenshots after data change @alisman (#4857)

🧰 Maintenance

• Update oncokb client after api change @alisman (#4865)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.0.2...v6.0.3
• Frontend: v6.0.2...v6.0.3

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning