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User/jpk/global sss #13

Merged
merged 3 commits into from
Apr 15, 2014
Merged

User/jpk/global sss #13

merged 3 commits into from
Apr 15, 2014

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jkrasting
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jkrasting added 3 commits April 4, 2014 13:59
@jkrasting
*Reproducing sums for SST_global and SSS_global
debafa1 
- Uses reproducing_sum() subroutine
- timestats.intel did not change for MOM6z_SIS_025 config
@jkrasting
*Reproducing sums for SST_global and SSS_global
022fae2 
- Uses reproducing_sum() subroutine for global area, SST_global,
  and SSS_global
- Use this commit instead of debafa1
@jkrasting
* Removed SSS_global print statement
ab145f0 
- Unnecessary verbiage
adcroft added a commit that referenced this pull request Apr 15, 2014
@adcroft
Merge pull request #13 from CommerceGov/user/jpk/global_sss
50ad5a9 
Tested and passed.
@adcroft adcroft merged commit 50ad5a9 into dev/master Apr 15, 2014
@jkrasting jkrasting deleted the user/jpk/global_sss branch April 15, 2014 20:12
gustavo-marques pushed a commit to gustavo-marques/MOM6 that referenced this pull request Jul 25, 2017
@alperaltuntas
Merge pull request mom-ocean#13 from alperaltuntas/dev/ncar
cd58e2a 
First version with uncommented update_ocean_model() call
nikizadehgfdl added a commit to nikizadehgfdl/MOM6 that referenced this pull request Oct 9, 2017
@nikizadehgfdl
Fix analysis script to work with any resolution, issue mom-ocean#13
a18b728 
- The script tools/analysis/EddyKineticEnergy.py was always loading the 1/4 degree gridSpec
  and fail for 1 deg models.
- Fixed it to use the ocean_static.nc in the working directory instead. Works for any resolution
- Fixed the calling refineDiag script to pass ocean_static.nc as grid.
- This fixes issue mom-ocean#13
nikizadehgfdl pushed a commit to nikizadehgfdl/MOM6 that referenced this pull request Oct 9, 2017
@adcroft
*SIS2: Bug fix: correct start index of data passed to icebergs
be1140a 
- icebergs were developed with SIS1 which had a hard-coded halo =1.
- SIS2 has a [run-time] wider halo and was passing the full array
  of some data (e.g. winds) to the icebergs.
- At some point the icebergs and their API should handle variable
  width halos but until then I am passing a sub-array of the needed
  data.
- Closes mom-ocean#13.
- Changes answers for SIS2 + icebergs.
nikizadehgfdl pushed a commit to nikizadehgfdl/MOM6 that referenced this pull request Oct 9, 2017
@adcroft
MOM6: Merge pull request mom-ocean#578 from NCAR/dev/ncar
8b801de 
- NOAA-GFDL/MOM6@ae22a0f Merge pull request mom-ocean#578 from NCAR/dev/ncar
- NOAA-GFDL/MOM6@f4f882f Merge pull request mom-ocean#23 from gustavo-marques/combine_mct_modules
- NOAA-GFDL/MOM6@a85b728 Merge MCT modules
- NOAA-GFDL/MOM6@ba5b5ba Merge pull request mom-ocean#22 from gustavo-marques/check_fluxes
- NOAA-GFDL/MOM6@f5a8483 Adds option to write restart files
- NOAA-GFDL/MOM6@8745b4b Fills additional IOB fluxes
- NOAA-GFDL/MOM6@f6b22ff Merge branch 'dev/ncar' into check_fluxes
- NOAA-GFDL/MOM6@369d5d6 Merge pull request mom-ocean#21 from alperaltuntas/dev/ncar
- NOAA-GFDL/MOM6@2582e0a Adds run paramaters to control SW decomposition
- NOAA-GFDL/MOM6@58f78b9 Fill IOB, some fluxes still need to be checked
- NOAA-GFDL/MOM6@06a30ab Fixed clock and timing
- NOAA-GFDL/MOM6@1bca79b Merge pull request mom-ocean#20 from gustavo-marques/fix_merge
- NOAA-GFDL/MOM6@fb89b08 Adds code that got lost during merge
- NOAA-GFDL/MOM6@7480492 Merge pull request mom-ocean#19 from gustavo-marques/new_merge
- NOAA-GFDL/MOM6@be1e6cf Merge branch 'dev/master' into dev/ncar
- NOAA-GFDL/MOM6@76565cb Merge pull request mom-ocean#17 from gustavo-marques/fix_ssh_slopes
- NOAA-GFDL/MOM6@c04f081 Fix ssh slope calculation
- NOAA-GFDL/MOM6@17d4586 Merge pull request mom-ocean#16 from adcroft/ncar-cherry-picked-fixes
- NOAA-GFDL/MOM6@be46fee (*)Fixes gprime(1) when no layer coordinates are set
- NOAA-GFDL/MOM6@fccb7ae Avoids a SEGV when OBC are not in use with bi-harmonic friction
- NOAA-GFDL/MOM6@f42c970 Merge pull request mom-ocean#15 from gustavo-marques/small_fixes
- NOAA-GFDL/MOM6@31787c2 Adds reference to set_time that was lost during a conflict handling
- NOAA-GFDL/MOM6@d77936e Fix intent(inout) in ice_ocean_boundary
- NOAA-GFDL/MOM6@b403edd Merge pull request mom-ocean#14 from gustavo-marques/docs
- NOAA-GFDL/MOM6@4d346ca Merge branch 'dev/ncar' into docs
- NOAA-GFDL/MOM6@f7c26a5 Clean the module and start doxygenizing it
- NOAA-GFDL/MOM6@cd58e2a Merge pull request mom-ocean#13 from alperaltuntas/dev/ncar
- NOAA-GFDL/MOM6@37a53bc reorganize file structure
- NOAA-GFDL/MOM6@e6c5ddd Merge pull request mom-ocean#12 from gustavo-marques/fill_ice_ocean_bnd
- NOAA-GFDL/MOM6@6b6289a Remove trailing whitespace
- NOAA-GFDL/MOM6@7ce40e5 Fix undefined reference to fill_ice_ocean_bnd
- NOAA-GFDL/MOM6@d517719 Merge branch 'dev/ncar' into fill_ice_ocean_bnd
- NOAA-GFDL/MOM6@b69ab33 Filling ice_ocean_bnd - Draft
- NOAA-GFDL/MOM6@a306c90 Merge pull request mom-ocean#11 from adcroft/use-ocn-public-for-surface
- NOAA-GFDL/MOM6@c83e238 Correct indexing when using ocean_public_type
- NOAA-GFDL/MOM6@1f39c84 Replaces use of "surface" with "ocean_public_type"
- NOAA-GFDL/MOM6@5cd8d7a Filling ice_ocean_bnd, still needs work
- NOAA-GFDL/MOM6@3ceef26 Merge pull request mom-ocean#10 from adcroft/sketch-out-mct-run
- NOAA-GFDL/MOM6@714e8d6 Adds placeholders for stepping foward MOM
- NOAA-GFDL/MOM6@7f2207c Merge pull request #7 from adcroft/fix-mct-whitespace
- NOAA-GFDL/MOM6@a1db77f Cleans up white space
- NOAA-GFDL/MOM6@5700d67 Merge pull request #6 from adcroft/add-use-only-for-imports
- NOAA-GFDL/MOM6@beac3ed Adds "only" for all use statements
- NOAA-GFDL/MOM6@231d19e Merge pull request #5 from alperaltuntas/dev/ncar
- NOAA-GFDL/MOM6@3a923a2 Got initialization working
- NOAA-GFDL/MOM6@8b38141 Wrapped global data
- NOAA-GFDL/MOM6@970f848 added debugging
- NOAA-GFDL/MOM6@2540ed8 Filled empty subroutines in ocn_comp_mct.F90
- NOAA-GFDL/MOM6@ed3ed30 Added ocn_import_export module
- NOAA-GFDL/MOM6@aba7dc2 Completed ocn_init_mct
- NOAA-GFDL/MOM6@5df3bc3 Added method to point ponters to members of ocean_state_type
- NOAA-GFDL/MOM6@57e6086 Added methods to return domain/grid shape
- NOAA-GFDL/MOM6@37e7356 Added ocn_import_export.F90
- NOAA-GFDL/MOM6@2b794da Merge pull request #4 from alperaltuntas/dev/ncar
- NOAA-GFDL/MOM6@fbd405b Added coupler indices module
- NOAA-GFDL/MOM6@fa86163 Merge pull request #3 from NCAR/dev/gfdl
- NOAA-GFDL/MOM6@e8f2999 Merge pull request #2 from gustavo-marques/temp_salt_z_init_file
- NOAA-GFDL/MOM6@86936ba Adds option to read initial temp and salt from separate files
- NOAA-GFDL/MOM6@54f7976 Most initialization working
- NOAA-GFDL/MOM6@426357c Time and calendar initialization in ocn_comp_mct.F90
- NOAA-GFDL/MOM6@346097d Moved blank ocn_comp_mct.F90
- NOAA-GFDL/MOM6@405fecb Merge pull request #1 from gustavo-marques/ice_shelf
- NOAA-GFDL/MOM6@711a613 Removes frazil's contribution to evaporation
nikizadehgfdl pushed a commit to nikizadehgfdl/MOM6 that referenced this pull request Oct 9, 2017
@adcroft
MOM6: Merge branch 'dev/master' into dev/gfdl
3f17d14 
- Updates MOM_parameter_doc files.

- NOAA-GFDL/MOM6@cde6d3f Merge branch 'dev/master' into dev/gfdl
- NOAA-GFDL/MOM6@ae22a0f Merge pull request mom-ocean#578 from NCAR/dev/ncar
- NOAA-GFDL/MOM6@f4f882f Merge pull request mom-ocean#23 from gustavo-marques/combine_mct_modules
- NOAA-GFDL/MOM6@a85b728 Merge MCT modules
- NOAA-GFDL/MOM6@ba5b5ba Merge pull request mom-ocean#22 from gustavo-marques/check_fluxes
- NOAA-GFDL/MOM6@f5a8483 Adds option to write restart files
- NOAA-GFDL/MOM6@8745b4b Fills additional IOB fluxes
- NOAA-GFDL/MOM6@f6b22ff Merge branch 'dev/ncar' into check_fluxes
- NOAA-GFDL/MOM6@369d5d6 Merge pull request mom-ocean#21 from alperaltuntas/dev/ncar
- NOAA-GFDL/MOM6@2582e0a Adds run paramaters to control SW decomposition
- NOAA-GFDL/MOM6@58f78b9 Fill IOB, some fluxes still need to be checked
- NOAA-GFDL/MOM6@06a30ab Fixed clock and timing
- NOAA-GFDL/MOM6@1bca79b Merge pull request mom-ocean#20 from gustavo-marques/fix_merge
- NOAA-GFDL/MOM6@fb89b08 Adds code that got lost during merge
- NOAA-GFDL/MOM6@7480492 Merge pull request mom-ocean#19 from gustavo-marques/new_merge
- NOAA-GFDL/MOM6@be1e6cf Merge branch 'dev/master' into dev/ncar
- NOAA-GFDL/MOM6@76565cb Merge pull request mom-ocean#17 from gustavo-marques/fix_ssh_slopes
- NOAA-GFDL/MOM6@c04f081 Fix ssh slope calculation
- NOAA-GFDL/MOM6@17d4586 Merge pull request mom-ocean#16 from adcroft/ncar-cherry-picked-fixes
- NOAA-GFDL/MOM6@be46fee (*)Fixes gprime(1) when no layer coordinates are set
- NOAA-GFDL/MOM6@fccb7ae Avoids a SEGV when OBC are not in use with bi-harmonic friction
- NOAA-GFDL/MOM6@f42c970 Merge pull request mom-ocean#15 from gustavo-marques/small_fixes
- NOAA-GFDL/MOM6@31787c2 Adds reference to set_time that was lost during a conflict handling
- NOAA-GFDL/MOM6@d77936e Fix intent(inout) in ice_ocean_boundary
- NOAA-GFDL/MOM6@b403edd Merge pull request mom-ocean#14 from gustavo-marques/docs
- NOAA-GFDL/MOM6@4d346ca Merge branch 'dev/ncar' into docs
- NOAA-GFDL/MOM6@f7c26a5 Clean the module and start doxygenizing it
- NOAA-GFDL/MOM6@cd58e2a Merge pull request mom-ocean#13 from alperaltuntas/dev/ncar
- NOAA-GFDL/MOM6@37a53bc reorganize file structure
- NOAA-GFDL/MOM6@e6c5ddd Merge pull request mom-ocean#12 from gustavo-marques/fill_ice_ocean_bnd
- NOAA-GFDL/MOM6@6b6289a Remove trailing whitespace
- NOAA-GFDL/MOM6@7ce40e5 Fix undefined reference to fill_ice_ocean_bnd
- NOAA-GFDL/MOM6@d517719 Merge branch 'dev/ncar' into fill_ice_ocean_bnd
- NOAA-GFDL/MOM6@b69ab33 Filling ice_ocean_bnd - Draft
- NOAA-GFDL/MOM6@a306c90 Merge pull request mom-ocean#11 from adcroft/use-ocn-public-for-surface
- NOAA-GFDL/MOM6@c83e238 Correct indexing when using ocean_public_type
- NOAA-GFDL/MOM6@1f39c84 Replaces use of "surface" with "ocean_public_type"
- NOAA-GFDL/MOM6@5cd8d7a Filling ice_ocean_bnd, still needs work
- NOAA-GFDL/MOM6@3ceef26 Merge pull request mom-ocean#10 from adcroft/sketch-out-mct-run
- NOAA-GFDL/MOM6@714e8d6 Adds placeholders for stepping foward MOM
- NOAA-GFDL/MOM6@7f2207c Merge pull request #7 from adcroft/fix-mct-whitespace
- NOAA-GFDL/MOM6@a1db77f Cleans up white space
- NOAA-GFDL/MOM6@5700d67 Merge pull request #6 from adcroft/add-use-only-for-imports
- NOAA-GFDL/MOM6@beac3ed Adds "only" for all use statements
- NOAA-GFDL/MOM6@231d19e Merge pull request #5 from alperaltuntas/dev/ncar
- NOAA-GFDL/MOM6@3a923a2 Got initialization working
- NOAA-GFDL/MOM6@8b38141 Wrapped global data
- NOAA-GFDL/MOM6@970f848 added debugging
- NOAA-GFDL/MOM6@2540ed8 Filled empty subroutines in ocn_comp_mct.F90
- NOAA-GFDL/MOM6@ed3ed30 Added ocn_import_export module
- NOAA-GFDL/MOM6@aba7dc2 Completed ocn_init_mct
- NOAA-GFDL/MOM6@5df3bc3 Added method to point ponters to members of ocean_state_type
- NOAA-GFDL/MOM6@57e6086 Added methods to return domain/grid shape
- NOAA-GFDL/MOM6@37e7356 Added ocn_import_export.F90
- NOAA-GFDL/MOM6@2b794da Merge pull request #4 from alperaltuntas/dev/ncar
- NOAA-GFDL/MOM6@fbd405b Added coupler indices module
- NOAA-GFDL/MOM6@fa86163 Merge pull request #3 from NCAR/dev/gfdl
- NOAA-GFDL/MOM6@e8f2999 Merge pull request #2 from gustavo-marques/temp_salt_z_init_file
- NOAA-GFDL/MOM6@86936ba Adds option to read initial temp and salt from separate files
- NOAA-GFDL/MOM6@54f7976 Most initialization working
- NOAA-GFDL/MOM6@426357c Time and calendar initialization in ocn_comp_mct.F90
- NOAA-GFDL/MOM6@346097d Moved blank ocn_comp_mct.F90
- NOAA-GFDL/MOM6@405fecb Merge pull request #1 from gustavo-marques/ice_shelf
- NOAA-GFDL/MOM6@711a613 Removes frazil's contribution to evaporation
MJHarrison-GFDL referenced this pull request in MJHarrison-GFDL/MOM6 Jun 15, 2021
@adcroft
*Bug fix: correct start index of data passed to icebergs
e8859ce 
- icebergs were developed with SIS1 which had a hard-coded halo =1.
- SIS2 has a [run-time] wider halo and was passing the full array
  of some data (e.g. winds) to the icebergs.
- At some point the icebergs and their API should handle variable
  width halos but until then I am passing a sub-array of the needed
  data.
- Closes #13.
- Changes answers for SIS2 + icebergs.
gustavo-marques added a commit to gustavo-marques/MOM6 that referenced this pull request Sep 13, 2021
@gustavo-marques
Merge pull request mom-ocean#13 from gustavo-marques/fix_units_visc_r…
7868fdd 
…em_terms

Fix units of *_visc_rem terms
SMoorthi-emc pushed a commit to SMoorthi-emc/MOM6 that referenced this pull request Sep 30, 2021
@pjpegion
Merge pull request mom-ocean#13 from NOAA-EMC/dev/emc
040e1f1 
Merge with EMC fork
marshallward referenced this pull request in marshallward/MOM6 Nov 18, 2021
@MJHarrison-GFDL
Merge pull request #13 from marshallward/pr_1534_mods
221df78 
Set netCDF attrs in MOM_horizontal_regridding
marshallward referenced this pull request in Hallberg-NOAA/MOM6 Nov 30, 2021
@Hallberg-NOAA
Expanded comments describing src/core code (#13)
e218478 
Added comments describing all of the real variables in the src/core directory
that did not previously have them, and corrected multiple spelling error in this
same directory.  This PR also updates the description of the MOM6 code structure
in MOM.F90 and adds dimensional descriptions to the commends describing a number
of variables.  Descriptions of the units of some variables were also added or
corrected in a number of the src/tracer files.  Changes are largely restricted
to comments describing varibles, although a few unused variables were removed.
One comment added to MOM_dynamics_split_RK2.F90 notes a possible memory leak,
due to a missing deallocate call, but the actual correction of this leak will be
delayed to a later, much more targeted commit.  All answers and output are
bitwise identical.
marshallward referenced this pull request in marshallward/MOM6 May 3, 2022
@marshallward
Candidate branch main->dev/gfdl
41a278b 
Note that most of these commits are from previously squashed pull
requests, and this PR is restoring them.

- 6360dbb Merge branch 'main' into main_to_dev
- bac8031 Merge pull request mom-ocean#1566 from jiandewang/EMC-FMS-mixed-mode-20220411
- e532d86 Merge pull request mom-ocean#88 from marshallward/missing_attrib_with_class_bugfix
- d380f1d An alternate fix to class(*) issues with FMS 2022-01
- 8ecf333 Merge pull request mom-ocean#87 from jiandewang/feature/update-to-main-20220317
- ba37f94 Merge remote-tracking branch 'FSU/main' into feature/update-to-main-20220317 this is corresponding to MOM6 main 20220317 commit (hash # 399a7db)
- 44313d9 Merge pull request mom-ocean#85 from jiandewang/feature/update-to-main-20220217
- 966707f Merge remote-tracking branch 'GFDL/main' into feature/update-to-main-20220217 this is corresponding to MOM6 main branch 20220217 commit (hash # 6f6d4d6), which originally based on GFDL-candidate-20220129
- 32c0e1e Merge pull request mom-ocean#81 from jiandewang/feature/update-to-main-20211220
- 9642b1d delete external/OCEAN_stochastic_phyiscs directory as Phil re-coded in external/stochastic_physics directory
- e7c9ada solve minor conflict in mom_cap.F90 mom_ocean_model_nuopc.F90 and MOM_energetic_PBL.F90, add two new files: src/parameterizations/stochastic/MOM_stochastics.F90 and config_src/external/stochastic_physics/stochastic_physics.F90
- 90d5961 Merge pull request mom-ocean#78 from jiandewang/feature/update-to-GFDL-20211019
- fd02017 Merge remote-tracking branch 'GFDL/main' into feature/update-to-GFDL-20211019
- 36f17eb Merge pull request mom-ocean#72 from pjpegion/ocn_stoch_july2021
- a9a957e return a more accurate error message in MOM_stochasics
- 56bb41e Merge branch 'ocn_stoch_july2021' of https://github.com/pjpegion/MOM6 into ocn_stoch_july2021
- ca2ae1c update to dev/emc
- 14ca4a1 Merge pull request mom-ocean#76 from jiandewang/feature/update-to-GFDL-20210914
- 29016c2 Merge remote-tracking branch 'GFDL/main' into feature/update-to-GFDL-20210914 merge GFDL main 20210914 commit (hash # c09e199)
- a8577df Merge branch 'NOAA-EMC:dev/emc' into ocn_stoch_july2021
- f8a8e4c update to gfdl 20210806 (mom-ocean#74)
- 16e6af0 update to dev/emc
- 237a510 add comments
- 1b4273d revert logic wrt increments
- 5b2040e add logic to remove incrments from restart if outside IAU window
- c5f2b72 add write_stoch_restart_ocn to MOM_stochastics
- bdf2dc7 doxygen cleanup
- 8bc4acc move stochastics to external directory
- a3fa3a1 Merge remote-tracking branch 'upstream/dev/emc' into ocn_stoch_july2021
- e4bc007 stochastic physics re-write
- 202cbd4 update to dev/emc
- 61717ee Merge remote-tracking branch 'origin/dev/emc' into ocn_stoch
- 565e0bb remove debug statements
- a4c0411 Merge remote-tracking branch 'upstream/dev/emc' into ocn_stoch
- 689a73f remove PE_here from mom_ocean_model_nuopc.F90
- 8afe969 clean up of mom_ocean_model_nuopc.F90
- 25ed4fc revert MOM_domains.F90
- b8d9888 place stochastic array in fluxes container and make SPPT specific arrays allocatable
- d984a7e remove stochastics container
- eb88219 clean up of code for MOM6 coding standards
- 6e3ea1b correct coupled_driver/ocean_model_MOM.F90 and other cleanup
- 0b99c1f make stochastics optional
- 85023f8 Merge remote-tracking branch 'upstream/dev/emc' into ocn_stoch
- 80f9f44 clean up MOM_domains
- 5443f8e remove blank link in MOM_diagnostics
- 1727d9a re-write of stochastic code to remove CPP directives
- 600ebf9 Merge remote-tracking branch 'upstream/dev/emc' into ocn_stoch
- 6bb9d0b fix non stochastic ePBL calculation
- 1d7ffa3 clean up code
- 040e1f1 Merge pull request #13 from NOAA-EMC/dev/emc
- 2cba995 Merge branch 'dev/emc' into ocn_stoch
- 1dc0f4f Merge remote-tracking branch 'upstream/dev/emc' into dev/emc
- 4bd9b9e clean up debug statements
- 25ed5ef additions for stochy restarts
- a2a374b add stochy_restart writing to mom_cap
- 0c15f4c Update MOM_diabatic_driver.F90
- 167a62e Merge pull request #12 from pjpegion/dev/emc
- bd477a9 Update MOM_diabatic_driver.F90
- 7212400 Update MOM_diabatic_driver.F90
- 7de295c cleanup of code and enhancement of ePBL perts
- cd06356 Merge pull request #11 from NOAA-EMC/dev/emc
- 9896d61 Merge pull request #9 from pjpegion/dev/emc_merge
- 0a62737 Merge branch 'ocn_stoch' into dev/emc_merge
- 3cad1ba Merge pull request #8 from NOAA-EMC/dev/emc
- c2aa2a8 updates from dev/emc
- 182ef34 additions for stochastic physics and ePBL perts
- 671c714 Merge pull request #1 from NOAA-EMC/dev/emc
andrew-c-ross added a commit to andrew-c-ross/MOM6 that referenced this pull request Aug 6, 2024
@andrew-c-ross
When units conversion is needed, only convert internal_heat if it is …
cda4301 
…associated (mom-ocean#13)
jiandewang added a commit that referenced this pull request Feb 3, 2025
@jiandewang
Merge pull request #13 from NickSzapiro-NOAA/patch-1
a7f8fd5 
Encapsulate init_is_restart_fh in ifndef CESMCOUPED
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2 participants
@jkrasting @adcroft