v4.0.3

🐛 Bug Fixes

• Returns a empty list when Structural Variant filter set is empty @dippindots (#4207)

🎨 Style Tweaks

• Don't let study name wrap @alisman (#4190)

📐 Prototype (Internal Use)

• Customize "NA" category on GENIE comparison clinical tab @leexgh (#4201)
• Treatment Target Frontend @Luke-Sikina (#4193)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v4.0.2...v4.0.3
• Frontend: v4.0.2...v4.0.3

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v4.0.2

🐛 Bug Fixes

• Fix deep linking in static content (e.g. OQL) @alisman (#4204)
• Fix gene edit pencil feature for combined study queries @alisman (#4203)
• Restore default genome build for genomic overview @alisman (#4202)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v4.0.1...v4.0.2
• Frontend: v4.0.1...v4.0.2

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v4.0.1

✨ Enhancements

• Violin plot table adjustments @adamabeshouse (#4199)

🐛 Bug Fixes

• Use variant class as well when generating the OncoKB query id @onursumer (#4196)

👷‍♀️ Testing, Configuration & Deployment

• Update failing local e2e screenshot @dippindots (#4198)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v4.0.0...v4.0.1
• Frontend: v4.0.0...v4.0.1

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v4.0.0

✨ Enhancements

• Timeline: custom tooltips for sample acquisition should have event data in addition to clinical data @alisman (#4192)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v3.7.30...v3.7.31
• Frontend: v3.7.30...v3.7.31

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v3.7.30

✨ Enhancements

• Add async hide/show check for custom tabs @alisman (#4167)

🐛 Bug Fixes

• Don't show legacy tooltip (qtip) when hovering VAF plot on patient page @alisman (#4191)
• Change TumorColumnFormatter to support structural variant alterations (two genes) @alisman (#4183)
• Fix bug where a comparison group has no survival data @alisman (#4186)

📘 Documentation

• Add study view and query how to videos @tmazor (#4187)

👷‍♀️ Testing, Configuration & Deployment

• Fix heatmap screenshots (heatmap working again) @inodb (#4189)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v3.7.29...v3.7.30
• Frontend: v3.7.29...v3.7.30

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v3.7.29

👷‍♀️ Testing, Configuration & Deployment

• Fix study view charts e2e test @alisman (#4184)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v3.7.28...v3.7.29
• Frontend: v3.7.28...v3.7.29

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v3.7.28

✨ Enhancements

• Add genomic coordinates to exon track tooltip @leexgh (#4165)

🐛 Bug Fixes

• Fix hrefs on MSKTabs (for opening directly in new tab) @alisman (#4175)
• Fix use of study tags in unauthorized study message @pvannierop (#4171)
• Fix Select All button logic for unauthorized studies @pvannierop (#4172)

👷‍♀️ Testing, Configuration & Deployment

• Update screenshots, fix charts button test and hide heatmaps tab in e2e @alisman (#4173)

🧰 Maintenance

• Genome Nexus api clients sync @leexgh (#4170)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v3.7.27...v3.7.28
• Frontend: v3.7.27...v3.7.28

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v3.7.27

🧬 Features

• Clinical X vs Y violin plots in study view. Beta implementation @adamabeshouse (#4097)
• Show namespace columns in MAF file in Mutation Table component @pvannierop (#4163)

✨ Enhancements

• Generic Assay selection performance improvement @dippindots (#4166)

🐛 Bug Fixes

• Correct use of case list by gene set hierarchy selector component @pvannierop (#4158)

👷‍♀️ Testing, Configuration & Deployment

• Fix flakey oncoprint test @alisman (#4161)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v3.7.26...v3.7.27
• Frontend: v3.7.26...v3.7.27

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v3.7.26

🧬 Features

• Show namespace columns in MAF file in Mutation Table component @pvannierop (#4159)

✨ Enhancements

• Collapse GSVA hierarchy selector on initialization @pvannierop (#4157)
• Format exon start and end location @leexgh (#4131)

🐛 Bug Fixes

• Remove observability from MutationTable columns collection to fix tooltip issue @alisman (#4149)
• Fix bar chart selection bug @onursumer (#4154)

👷‍♀️ Testing, Configuration & Deployment

• Update localdb screenshots @alisman (#4150)
• Unskip more e2e tests @alisman (#4147)

📦 Package Improvements

• Update signal component to support both somatic and germline @leexgh (#4130)

✂️ Reverted due to critical bugs

• Revert "Improve performance for generic assay selection in add charts workflow" @dippindots (#4156)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v3.7.25...v3.7.26
• Frontend: v3.7.25...v3.7.26

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v3.7.25

✨ Enhancements

• Improve performance for generic assay selection in add charts workflow @dippindots (#4143)

🐛 Bug Fixes

• Fix getData function of exon column formatter @onursumer (#4144)
• Properly adjust oncokb content within annotation column @onursumer (#4121)

🎨 Style Tweaks

• Putative Passenger tooltip icon (rebased) @dianab0 (#4141)

👷‍♀️ Testing, Configuration & Deployment

• Unskip and fix some e2e tests @alisman (#4125)
• Correct failing CNA e2e-localdb test @pvannierop (#4134)
• Clear localdb circleci cache and update screenshot @alisman (#4133)
• Fix driver filtering e2e-localdb tests @pvannierop (#4099)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v3.7.24...v3.7.25
• Frontend: v3.7.24...v3.7.25

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning