v3.7.24

✨ Enhancements

• Retire expression tab user message @alisman (#4122)

🐛 Bug Fixes

• Fix detection of rna_seq molecular profile @alisman (#4123)
• study view - Always show available generic assay add chart tabs regardless of filtering @adamabeshouse (#4119)
• Remove unused line causing issues in DefaultTooltip @adamabeshouse (#4118)

🧹 Cleanup & Refactoring 🔧

• appBootstrapper and routes .jsx->.tsx @adamabeshouse (#4101)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v3.7.23...v3.7.24
• Frontend: v3.7.23...v3.7.24

🏷️Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v3.7.23

🧬 Features

• Make numerical interval filter breadcrumbs in study view editable @adamabeshouse (#3992)
• Add option for single vs multi OncoKB icons @onursumer (#4090)

✨ Enhancements

• Make numerical interval filter breadcrumbs in study view editable @adamabeshouse (#3992)
• Optionally show NA when comparing categorical clinical data @inodb (#4113)

🐛 Bug Fixes

• Results page should show query form when no genes are specified in query @alisman (#4108)

🎨 Style Tweaks

• Fix issue with aligning arrow in DefaultTooltip @adamabeshouse (#4115)

📘 Documentation

• Add OQL how-to video @tmazor (#4112)

👷‍♀️ Testing, Configuration & Deployment

• rewrite e2e xml result to eliminate duplicates reports due to retries @alisman (#4110)

🧰 Maintenance

• Sync api clients @alisman (#4111)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v3.7.22...v3.7.23
• Frontend: v3.7.22...v3.7.23

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v3.7.22

✨ Enhancements

• Conditionally fetch mutation assessor download data @onursumer (#4106)
• Fix import of structural variants from query into oncoprinter @adamabeshouse (#4091)

🐛 Bug Fixes

• Fix handling of Spearman correlation (et al) with NaN value from server @alisman (#4107)
• Add back github friendly markdown support to static markdown component @alisman (#4104)

👷‍♀️ Testing, Configuration & Deployment

• Add e2e test for freqency calculation in study view on study with cal… @alisman (#4109)
• Fix e2e screenshot mismatch threshold and associated resulting test failures @alisman (#4100)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v3.7.21...v3.7.22
• Frontend: v3.7.21...v3.7.22

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v3.7.21

🐛 Bug Fixes

• Fixed the rendering of html inside of the unauthorized message @dianab0 (#4094)
• Use alteration type enum to detect mutation profile (fixes missing profile bug) @alisman (#4092)
• Handle case where study has more than one profile for a given alterat… @alisman (#4088)

👷‍♀️ Testing, Configuration & Deployment

• Update reference screenshot for failing GSVA onocprint tracks animation @pvannierop (#4095)
• Fix e2e-localdb test for gsva tracks in oncoprint @pvannierop (#4093)
• Added e2e test to check that result views tabs can be disabled @dianab0 (#4085)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v3.7.20...v3.7.21
• Frontend: v3.7.20...v3.7.21

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v3.7.20

✨ Enhancements

• Deactivate checkbox for unauthorized studies @dianab0 (#4077)
• Timeline: allow user to mouse into the tooltip and add hyperlink treatment for attributes @alisman (#4076)
• Timeline: show zoom instruction @alisman (#4079)

🐛 Bug Fixes

• Returns an empty list for undefined profileIds in isSampleProfiledInMultiple function @dippindots (#4083)
• Do not fetch structural variants data when there are no applicable samples @dippindots (#4089)
• Fix PathwayMapper in Safari @onursumer (#4082)
• Fix exon track error when no exon in transcript @leexgh (#4080)

👷‍♀️ Testing, Configuration & Deployment

• Fix e2e-localdb tests @pvannierop (#3970)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v3.7.19...v3.7.20
• Frontend: v3.7.19...v3.7.20

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v3.7.19

✨ Enhancements

• Add how-to links to study page and mutation tab using new markdown-driven help widget @alisman (#4074)

🐛 Bug Fixes

• X vs Y scatter charts now give the correct data download @adamabeshouse (#4068)
• Add OncoKB resistance level info for annotation column download @onursumer (#4066)

📘 Documentation

• Add longitudinal evolution video to tutorials page @tmazor (#4073)

👷‍♀️ Testing, Configuration & Deployment

• Fix screenshot after cna data introduced @alisman (#4071)

📐 Prototype (Internal Use)

• In timeline add HTAN OHSU Image Icon @inodb (#4075)
• Timeline: color treatment tracks by category @alisman (#3983)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v3.7.18...v3.7.19
• Frontend: v3.7.18...v3.7.19

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v3.7.18

✨ Enhancements

• Study View optimization: Call selected selectedSamples to and count services concurrently @adamabeshouse (#4003)
• Homepage mode: show unauthorized studies in the study list @dianab0 (#3987)

🐛 Bug Fixes

• Fix FAQ deep linking from index @alisman (#4064)
• Fix custom tabs configuration @dianab0 (#4061)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v3.7.17...v3.7.18
• Frontend: v3.7.17...v3.7.18

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v3.7.17

✨ Enhancements

• Separate unprofiled samples into separate group in comparison tab @adamabeshouse (#3760)

🐛 Bug Fixes

• Fix missing co-expression results for miRNAs and phosphoproteins @onursumer (#4039)
• Generic Assay dropdown: don't show NA when name or description missing (use id instead) @dippindots (#4054)

🧰 Maintenance

• Upgrade to jquery 3.6 and bootstrap 3.4 (remove qtip deps) @alisman (#4056)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v3.7.16...v3.7.17
• Frontend: v3.7.16...v3.7.17

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v3.7.16

✨ Enhancements

• Filter style attributes out of timeline tooltip @adamabeshouse (#4020)
• Don't show Unknown values in Clinical Comparison @inodb (#4032)

🐛 Bug Fixes

• Fix uniprot PTM crash when centain fields are missing in uniprot data @leexgh (#4034)

🏎 Performance Tweaks

• comparison page: fetch all samples and then filter them down, cache optimization @adamabeshouse (#3994)

📘 Documentation

• Add new tutorial (Filtering and adding clinical data to Mutations tab) @alisman (#4051)
• add link to proteomics video @SRodenburg (#4038)

👷‍♀️ Testing, Configuration & Deployment

• Update screenshots and enable spec files retry @alisman (#4055)
• Rollback to use localdist for e2e tests @onursumer (#4027)
• study view: Add localdb tests for x vs y charts @adamabeshouse (#4017)

🧰 Maintenance

• Update OncoKB client @zhx828 (#4036)
• Revert "Upgrade jquery and bootstrap" @alisman (#4053)
• Upgrade jquery and bootstrap @alisman (#4049)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v3.7.15...v3.7.16
• Frontend: v3.7.15...v3.7.16

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v3.7.15

🧬 Features

• Add uniprot topology track @leexgh (#4004)

✨ Enhancements

• Filter survival rows per # in group @inodb (#4013)

🐛 Bug Fixes

• Fix mobx error @dippindots (#4033)
• Do not make empty call to generic assay meta endpoint on patient view page @dippindots (#4019)
• Fix news markdown images @inodb (#4018)

📘 Documentation

• Add new how-to video to tutorials page @alisman (#4028)

👷‍♀️ Testing, Configuration & Deployment

• Fix timeouts in tests @dippindots (#4035)
• Remove external frontend condition for localdb end to end test @onursumer (#4016)
• Update tests @dippindots (#4030)
• Fix nightly build @onursumer (#4031)

🧰 Maintenance

• Update dependency: webpack raphael @dippindots (#4022)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v3.7.14...v3.7.15
• Frontend: v3.7.14...v3.7.15

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning