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LogonModeling
This page contains various code examples showing how to estimate and apply statistical models within LOGON. For more detailed information on feature types, estimation parameters, or the experimentation environment in general, see Velldal (2008).
In the following, we assume that generation treebanks for the LOGON JHPSTG and Rondane corpora are available. For the HandOn release (of November 2008) of the LOGON system, these treebanks can be installed into the lingo/redwoods/ directory from SVN; see the LogonExtras page for instructions on how to install add-on LOGON components. However, in principle, these instructions should be applicable to other Redwoods-style treebanks. Information on how to create a generation treebank is given on the LogonProcessing/BatchGeneration page.
The examples below assume that the [incr tsdb()] database root is pointing to the collection of LOGON treebanks, i.e. the directory lingo/redwoods/tsdb/home/, which is one of the SVN add-on components (see the LogonExtras page). We further assume that the complete LOGON system and correct grammar (the ERG from lingo/redwoods/erg/, in our case) are already loaded.
Set the feature parameters. The system defaults correspond to:
(let ((*feature-grandparenting* 4)
(*feature-active-edges-p* t)
(*feature-ngram-size* 4)
(*feature-ngram-back-off-p* t)
(*feature-ngram-tag* :type)
(*feature-use-preterminal-types-p* t)
(*feature-lexicalization-p* t)
(*feature-constituent-weight* 2)
(*feature-lm-p* 10)
(*feature-frequency-threshold* nil))
...)
Create a feature cache for the (virtual) profile jhpstg.g (we typically use the .g suffix for generation treebanks):
(setq gold "jhpstg.g")
(operate-on-profiles (list gold) :task :fc)
Intended as a one-time operation, the feature caching extracts all the features from the treebank and stores them in a (Berkeley DB) database within the respective profile directory (named fc.bdb). When running experiments later, this means that we simply look up the features in the DB, saving us the cost of extraction. A symbol table named fc.mlm (also created within the jhpstg.g profile for the example above) records the mapping from symbolic feature representations to numerical indexes (as used for model estimation and DB storage). The symbol table is only referenced when exporting or applying a model to new data (see the example below), but it can also be useful to inspect manually, e.g. to confirm that features have the correct form, plausible counts, plausible value ranges, etc.
Example of how to run a single experiment using 5-fold cross-validation:
(setq test "jhpstg.t")
(tsdb :create test :skeleton "jhpstg")
(rank-profile gold test :nfold 5)
The number of cross-validation folds is specified with the :nfold parameter. An optional :niterations parameter may be used to specify how many of these folds are actually run to save execution time.
Running a batch of 10-fold MaxEnt experiments on jhpstg.g, iterating over different configurations of features and estimation parameters (the top-level function batch-experiment() performs an exhaustive 'grid search' over all combinations of specified parameter values):
(batch-experiment
:type :mem
:variance '(nil 1000 100 10 1 1.0e-1 1.0e-2)
:absolute-tolerance 1.0e-10
:source "jhpstg.g"
:skeleton "jhpstg"
:random-sample-size nil
:ngram-size '(0 1 2 3)
:active-edges-p nil
:grandparenting '(0 1 2 3)
:lm-p 10
:counts-relevant 1
:nfold 10
:compact nil)
The following gives a brief explanation of the various keyword arguments. The :variance parameter governs the Gaussian prior on feature weights.; :absolute-tolerance governs the convergence threshold. Specifying a non-nil (integer) value n for :random-sample-size means that only a random selection of (maximally) n non-preferred candidates for each item is included in the training data. The parameter :counts-relevant governs a frequency-based cutoff on feature values. The keywords :ngram-size, :active-edges-p, and :grandparenting allow iteration over feature parameters. Note that specifying :lm-p 10 means that the value of the language model feature is divided by 10; this is basically a hack to avoid numerical problems during estimation. To leave out the LM feature, call with :lm-p nil instead. Specifying :type :mem means that we are training a conditional maximum entropy model (aka log-linear model). The value of :type could also be :svm if you have SVMlight installed (it is currently not part of the LOGON dstribution). The boolean-valued :compact governs the naming convention when creating target profiles, i.e. if the profile names for the 10-fold cross validation experiments look excessively long (or even cause issues with OS-imposed limits on the total length of pathnames), try t as the :compact value.
After running the grid search, you need to evaluate the different combinations of parameters to determine the optimal combination for parsing accuracy. Running:
(summarize-experiments :stream t)
will summarize various metrics for each grid search experiment that has been run. This reports accuracy, variance, number of iterations as well as the filename of the experiment (which allows you to determine the parameters), with one item per line. Redirecting this to a file, you can sort -n and manually determine the optimal parameter combination.
Having determined the appropriate parameters, you can use them to estimate and export a maxent model, such as the following:
(let ((*feature-grandparenting* 3)
(*feature-ngram-size* 3)
(*feature-lm-p* nil)
(*maxent-variance* 8e-4)
(*feature-frequency-threshold* (make-counts :relevant 1)))
(train "jhpstg.g" "jhpstg.g.mem" :fcp nil :type :mem))
This writes the estimated model to jhpstg.g.mem (for more information on the format, see Chapter 6 of Velldal (2008)). The keyword argument :fcp nil means that we do not want to create a feature cache, but rather use the one we already have.
Applying the model trained above to the generation treebank rondane.g:
(tsdb :create "rondane.t" :skeleton "rondane")
(operate-on-profiles
(list "rondane.g") :model (read-model "jhpstg.m.mem")
:target "rondane.t" :task :rank)
Once the LOGON ERG add-on treebanks are installed (see the LogonExtras page), there are several Lisp parameter files and a shell script (called lingo/redwoods/load) to run the steps above from the command line. For example, the creation of a feature cache (on the default generation treebank jhpstg.g) can be automated as follows:
cd $LOGONROOT/lingo/redwoods
./load --binary fc.g.lisp
The parameter file grid.g.lisp provides the default setup for an exhaustive grid search for the best-performing combinations of features and meta-parameters. Once optimal parameters values are identified, the file train.g.lisp automates the training and serialization of a MaxEnt model file, in this case called (by default) jhpstg.g.mem. All of the Lisp files are intended for use with the load script, analogous to the call example given above. Even on adequate hardware (we recommend a 64-bit Linux environment with at least eight gigabytes of available RAM), each of these steps can take substantial time, i.e. between several hours and many days (for the grid search, depending on how many parameter variations are explored).
Note that there are 'families' of Lisp parameter files in lingo/redwoods/, one for parse ranking (fc.lisp, grid.lisp, train.lisp), one for realization ranking (used in our examples above), and another one for end-to-end MT re-ranking (fc.r.lisp, grid.r.lisp, and train.r.lisp). For each task, there is an additional file defining the default environment, called parsing.lisp, generation.lisp, and ranking.lisp). Furthermore, the [incr tsdb()] configuration for automated MaxEnt experimentation is determined by the file dot.tsdbrc in lingo/redwoods/.
These files are distributed primarily to serve as examples for similar experimentation. To vary the nature of each experiment (e.g. using different treebanks, another grammar or MT configuration, or additional feature types), it may be necessary to adapt dot.tsdbrc and the Lisp configuration files appropriately (or even the load script). Where possible, we recommend copying the existing files to create a new 'family' of parameter settings and tasks.
To keep the databases of a manageable size, individual profiles are typically limited to between 500 to 2000 items each. If you need to work with a larger data set set you may combine several profiles into a single read-only virtual profile. Virtual profiles are (currently) only used in parse selection experiments and are only supported in parts of the [incr tsdb()] code base.
For example, the LOGON tree contains a virtual profile for the complete JHPSTG corpus in the lingo/redwoods/tsdb/home/jhpstg/ directory. A virtual profile consists of a single text file called virtual that contains the list of the profiles it includes (in this case, the individual JHPSTG sections), one profile per line, where the profile names are double-quoted.
The parameter grid search process writes its output (fold and scoring results from n-fold cross validation) to new profiles, which in the default experimentation setup of the LOGON tree are created below lingo/redwoods/tsdb/home/. In order to create these outputs for a virtual profile, [incr tsdb()] requires a skeleton that contains the parts of the profile that will be shared among all the outputs. The skeleton for the full JHPSTG corpus is in lingo/lkb/src/tsdb/skeletons/english/logon/jhpstg/. This was created by concatenating the item and item-set files from all the profiles jhpstg contains and copying in the relations file, essentially the following sequence of operations:
cd $LOGONROOT/lingo/lkb/src/tsdb/skeletons/english/logon
mkdir jhpstg
cat jh{0,1,2,3,4,5}/item {ps,tg}/item > jhpstg/item
cat jh{0,1,2,3,4,5}/item {ps,tg}/item-set > jhpstg/item-set
cp ../Relations jhpstg/relations
This skeleton is made visible to [incr tsdb()] by adding the appropriate line to the skeleton registry file lingo/lkb/src/tsdb/skeletons/english/logon/Index.lisp.
A new virtual profile can be defined by creating the appropriate virtual file; in case it is to be used for the parameter grid search step, one also needs to create the corresponding [incr tsdb()] skeleton.
This section shows a procedure for creating a generation model without a treebank for the items used for the model, and where the MRSs that are generated from are underspecified.
The following command parses the English Tanaka Corpus sentences in rtc006 and stores the 5 top ranked MRSs.
cd $LOGONROOT
./parse --binary --erg+tnt/mrs --best 5 rtc006
The profile is stored in $LOGONROOT/lingo/lkb/src/tsdb/home/erg/1004/rtc006/10-10-10/pet/, given that the version of the ERG is 1004, and that the date is October 10, 2010. The next step is to make a gold profile from the parsed profile:
TSDBHOME=$LOGONROOT/lingo/lkb/src/tsdb/home
export PATH=$TSDBHOME:$PATH
mkdir $TSDBHOME/gold/erg/rtc006/
cp $TSDBHOME/erg/1004/rtc006/10-10-10/pet/* $TSDBHOME/gold/erg/rtc006/.
python underspecify.py $TSDBHOME/gold/erg/rtc006/result
The [underspecify.py;](/LogonModeling?action=AttachFile&do=upload_form&ticket=006099bd3f.4c8ac87827ce19dd7e2871833ee82a035f21590f&target=underspecify.py%3B "Upload new attachment "underspecify.py;"") script finds the top ranked MRSs in the result file and under-specifies them with regard to person, number, gender, definiteness, and some location relations. This is useful if the generation model is meant for generation with the MtJaen translation system since the output of the Jaen transfer grammar is often under-specified with regard to these features.
A generation profile is created with the following command:
./generate --binary --update rtc006
The generation profile is written into $LOGONROOT/lingo/lkb/src/tsdb/home/erg/1004/rtc006/10-10-10/lkb/. The files preference and tree are given information about generated items that match the original item by executing the [gentreebank.py;](/LogonModeling?action=AttachFile&do=upload_form&ticket=006099bd3f.4c8ac87827ce19dd7e2871833ee82a035f21590f&target=gentreebank.py%3B "Upload new attachment "gentreebank.py;"") script:
python gentreebank.py $TSDBHOME/erg/1004/rtc006/10-10-10/lkb/result
A generation model based on the rtc006 generation profile produced above can be trained as follows:
1. Modify the fc.g.lisp file in the $LOGONHOME/lingo/redwoods directory so that it operates on your generation profile.
(operate-on-profiles '("erg/1004/rtc006/10-10-10/lkb/"))
2. Modify the dot.tsdbrc file in the same directory so that the line
(tsdb :home (format nil "~a/lingo/redwoods/tsdb/home" root))
becomes
(tsdb :home (format nil "~a/lingo/lkb/src/tsdb/home" root))
3. Modify the load file in the same directory. The line
echo "(lkb:read-script-file-aux \"${REDWOODS}/erg/lkb/script\")";
should be
echo "(lkb:read-script-file-aux \"${LOGONROOT}/lingo/erg/lkb/script\")";
4. Do feature caching:
cd $LOGONROOT/lingo/redwoods
./load --binary fc.g.lisp
5. Modify the train.g.lisp script in the redwoods directory so that it uses your generation profile for the training:
(train "erg/1004/rtc006/10-10-10/lkb" "erg/1004/mrs/10-10-10/lkb/rtc006.g.mem" :fcp nil)
6. Train the model:
./load --binary train.g.lisp
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