Upgrade the Monarch UI (sup)

[sagehrke]

Super ticket for upgrades to the Monarch UI

These upgrades are at the direction of the Monarch Directors @monarch-initiative/leadership

Need Director Decision

NEW Monarch Initiative Consortium Website

• Upgrade the "What is Monarch?" section of the landing page  #774
• Update the About page on mi.org #780
• Integrate the search across Monarch foundational products (as appropriate) #736
• Add Monarch's commitment to DEI on mi.org #813
• Better integrate phenotype set analyses within site #822
• Come to consensus on Monarch wide color scheme  #876

Monarch KG Site

• Identify Monarch KG and Ontology navigation strategy  #769
• Update the chatbot to be cross-monarch-product functional phenomics-assistant#11
• Update ortholog table column order #881
• Support pseudo-association merging in the UI via Solr result grouping #337

---

Current work

• Deploy Monarch-app from a separate project nested underneath the top level Monarch Initiative #776
• Evaluate and Improve Disease Node pages #750
• Clinical Synopsis #871

Up Next

NEW Monarch Initiative Consortium Website

• Create a top level page for Monarch APIs #779
• Remove Monarch-KG search bar from homepage #805
• Move Youtube videos on landing page to dedicated Monarch KG site #806
• Add product videos to the mi.org site  #817
• Idea: move funding from Team page to About page #812
• Update 'How to Contribute' pages #833
• Update Monarch Documentation Ingest Principles Tab to list all Monarch Ingest Principles #874

Monarch KG Site

• R24 Aim 1.1: Perform user experience testing, evaluate prototypes and prioritize development #867
• SUPER: Review columns for all association tables  #882
• Feedback form - Ray Stefancsik - Hi team, I would like to draw attention to a usability bu... #744
• Add frequency bands to the Histopheno chart #788
• Filter diseases by species in results page #790
• Idea: make breadcrumbs on node page more visually engaging  #816
• Move Youtube videos on landing page to dedicated Monarch KG site #806
• In results table, group relations per gene, avoid single entry per relation. #821
• Design more category icons #311
• Could not find license information for (GO) data #834
• Design a card that provides an overview of variants associated with a gene #864
• Design a card that provides an overview of all models for each disease #865
• Text Annotator: Tweak user-facing language provide user feedback mechanism on recognized entities #866
• Obsoletes should be clearly indicated in UI (and in API results) #868
• Enable ability to load a phenotypic profile from a Phenopacket, visualize as Phenogrid #870
• Number of models by species #872
• Better overview of x-species phenotypes #873
• Improve association section titles for gene disease and phenotype pages #875
• Improve ordering of association sections on node pages #877
• Move "extra info" back to the top of the node page #878
• Redesign presentation of GO associations  #879
• Fix off by one error on association tables #880
• Update ortholog table column order #881

---

Completed in Sept 2024 release

• Update the Landing Page on mi.org #735 @iimpulse @amc-corey-cox
• Configure redirects from monarchinitiative.org  #672 @kevinschaper
• Update Explore page on mi.org #777 @amc-corey-cox
• Remove Resources Page on mi.org #778 @amc-corey-cox
• Update Team Page  #796

Completed in Oct 2024 release

• Update the progressive disclosure on mi.org #734
• Show all association tables together #775
• Update https://monarchinitiative.org/publications with latest publication list from Google Scholar #828
• Duplicate HPO entries #787

Completed in Nov 2024

• Capture feedback about proposed table with "all associations together" #849