v0.13.3

What's Changed

• Added missing function's documentations by @wverastegui in #225
• fixed eic splitting and updated tests by @hechth in #226

Full Changelog: v0.13.2...v0.13.3

v0.13.2

Full Changelog: v0.13.1...v0.13.2

v0.13.1

What's Changed

• Moved import order in the hope it will fix the import bugs by @hechth in #224

Full Changelog: v0.13.0...v0.13.1

v0.13.0

What's Changed

• Implemented unit test for the function load.lcms.R by @wverastegui in #216
• remove_noise function updated by @KristinaGomoryova in #219
• Updated correct time to use precomputed clusters by @zargham-ahmad in #220
• Fix tests by @hechth in #222
• feature.alignment function refactored by @KristinaGomoryova in #221
• removed outdated files by @hechth in #223

New Contributors

• @KristinaGomoryova made their first contribution in #219

Full Changelog: v0.12.0...v0.13.0

v0.12.0

[0.12.0] - 2023-07-10

Changed

• sample names in aligned tables no longer use _intensity and _rt suffixes #212

Removed

• corner case in peak picking when an EIC was between 2 and 10 features #212

Full Changelog: v0.11.0...v0.12.0

v0.11.0

What's Changed

• Fixed CI by restricting icu version by @hechth in #195
• Refactored find.match function by @zargham-ahmad in #193
• Curate baseline_correct parameter by @xtrojak in #189
• Simplified Evaluation Conditions For Test Cases by @zargham-ahmad in #197
• Rename proc.cdf to remove_noise by @xtrojak in #190
• Small refactorings on combine.seq.3 and general adaptive.bin by @hechth in #196
• Fixed dimension issue in adaptive.bin by @zargham-ahmad in #200
• Update r-conda.yml with actions/checkout@v3 by @hechth in #206
• Implemented new version for clustering by @hechth in #201
• Added CITATION.cff file by @hechth in #203
• prepare for new version release by @hechth in #208

Full Changelog: v0.10.3...v0.11.0

Release v0.10.3

What's Changed

• Introduced parallelism in feature.align by @zargham-ahmad in #182

Full Changelog: v0.10.2...v0.10.3

v0.10.2

What's Changed

• Fixed column selection bug recover.weaker by @zargham-ahmad in #180
• 0.10.2 release by @hechth in #181

Full Changelog: v0.10.1...v0.10.2

v0.10.1

What's Changed

• Documented functions, removed unused variables & small refactoring of prof.to.features.R by @wverastegui in #170
• updated CI with codecov by @zargham-ahmad in #173
• updated environment and docker files by @hechth in #172
• Refactored, renamed variables, updated comments of rm.ridge.R by @wverastegui in #171
• Full test data test for unsupervised and hybrid by @zargham-ahmad in #177
• Use updated tolerances in workflows by @xtrojak in #178

Full Changelog: v0.10.0...v0.10.1

v0.10.0

What's Changed

Added

• added documentation from Rd files to code #78
• added tests with realistic testdata for extract_features.R #42, #54
• added tests for feature.align.R (#40), and adjust.time.R (#39)
• added CI to repository's GitHub Actions #45,#49
• added additional test cases for hybrid #133
• added tests and testdata for run_filter.R #156
• merge_features_and_known_table wrapper for augmentation of aligned features and known table #154

Changed

• refactored feature.align.R #63#88#102
• refactored adjust.time.R #64#102
• refactored find.tol.time.R #91
• refactored find.turn.point.R #91
• refactored proc.cdf.R and adaptive.bin.R #137
• refactored cont.index.R and renamed as run_filter.R #156
• use proper sample IDs inside feature tables #153
• exported functions in NAMESPACE #154
• docstrings and documentation files for refactored functions #160
• refactored parameter names to keep them more harmonized #167
• moved some utility functions to a more suitable locations #164

Removed

• extract_features and feature.align #154
• improper usage of @examples #160
• several obsolete utility functions #164
• several outdated .Rd files #168
• default argument values from low-level functions #168