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[pull] master from JabRef:master #550

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Commits on Sep 28, 2020

  1. Bump unirest-java from 3.10.00 to 3.11.00 (#6956) 

    Bumps [unirest-java](https://github.com/Kong/unirest-java) from 3.10.00 to 3.11.00.
- [Release notes](https://github.com/Kong/unirest-java/releases)
- [Changelog](https://github.com/Kong/unirest-java/blob/main/CHANGELOG.md)
- [Commits](Kong/unirest-java@v3.10.00...v3.11.00)

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  2. Bump me.champeau.gradle.jmh from 0.5.1 to 0.5.2 (#6955) 

    Bumps me.champeau.gradle.jmh from 0.5.1 to 0.5.2.

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  3. Bump java-diff-utils from 4.7 to 4.8 (#6954) 

    Bumps [java-diff-utils](https://github.com/java-diff-utils/java-diff-utils) from 4.7 to 4.8.
- [Release notes](https://github.com/java-diff-utils/java-diff-utils/releases)
- [Changelog](https://github.com/java-diff-utils/java-diff-utils/blob/master/CHANGELOG.md)
- [Commits](java-diff-utils/java-diff-utils@java-diff-utils-parent-4.7...java-diff-utils-parent-4.8)

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  4. Bump mockito-core from 3.5.11 to 3.5.13 (#6950) 

    Bumps [mockito-core](https://github.com/mockito/mockito) from 3.5.11 to 3.5.13.
- [Release notes](https://github.com/mockito/mockito/releases)
- [Commits](mockito/mockito@v3.5.11...v3.5.13)

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  5. Bump byte-buddy-parent from 1.10.15 to 1.10.16 (#6949) 

    Bumps [byte-buddy-parent](https://github.com/raphw/byte-buddy) from 1.10.15 to 1.10.16.
- [Release notes](https://github.com/raphw/byte-buddy/releases)
- [Changelog](https://github.com/raphw/byte-buddy/blob/master/release-notes.md)
- [Commits](raphw/byte-buddy@byte-buddy-1.10.15...byte-buddy-1.10.16)

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  6. Bump checkstyle from 8.36.1 to 8.36.2 (#6948) 

    Bumps [checkstyle](https://github.com/checkstyle/checkstyle) from 8.36.1 to 8.36.2.
- [Release notes](https://github.com/checkstyle/checkstyle/releases)
- [Commits](checkstyle/checkstyle@checkstyle-8.36.1...checkstyle-8.36.2)

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  7. Fix Preferences Search (#6946)

    @fabiojavamarcos
    fabiojavamarcos committed Sep 28, 2020
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Commits on Sep 29, 2020

  1. Refine ADR-0007

    @koppor
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  2. DOI matching in duplicate check (#6897) 

    Co-authored-by: Andrew Kuncevich <kuncevich_andrei@mail.ru>
    @Siedlerchr @KunAndrew
    Siedlerchr and KunAndrew committed Sep 29, 2020
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  3. Add new author

    @koppor
    koppor committed Sep 29, 2020
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  4. fixed 'copy key and link' (#6871) 

    * 'copy key and link' from right-click menu creates a string that is not a url. it includes the url, but it also includes the key... it works now

* updated authorlist

* added entry to change log

* 'copy key and link' now sets html content again and also sets a fallback string

* Update src/main/java/org/jabref/gui/edit/CopyMoreAction.java

Co-authored-by: Oliver Kopp <kopp.dev@gmail.com>

* CHANGELOG.md

* Remove obsolete method

Remove obsolete method

Co-authored-by: Oliver Kopp <kopp.dev@gmail.com>
Co-authored-by: Carl Christian Snethlage <50491877+calixtus@users.noreply.github.com>
Co-authored-by: Siedlerchr <siedlerkiller@gmail.com>
    @PremKolar @koppor
    @calixtus @Siedlerchr
    4 people committed Sep 29, 2020
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Commits on Oct 1, 2020

  1. Merge commit 'dbe92ada8986ee618921d01736d4ba714ce987e6' into master

    github actions committed Oct 1, 2020
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  2. Squashed 'src/main/resources/csl-styles/' changes from 26265bf..6fab78b 

    6fab78b Create physiologia-plantarum.csl (#5040)
58d65fd Create cureus.csl (#5048)
5b68591 Create institut-de-recherches-archeologiques-preventives.csl (#5042)
e238ca2 Create method-and-theory-in-the-study-of-religion.csl (#5041)
39a3fbb Create finance-and-society.csl (#5043)
cf39e19 Create canadian-biosystems-engineering-journal (#5046)
3d12b8f Create cardiff-university-biosi-and-carbs-only-harvard.csl (#5024)
776002d create new independent style for deutsches-arzteblatt.csl (#5035)
b167cd6 Create revista-peruana-de-medicina-experimental-y-salud-publica.csl (#5036)
13e0a0b Update iso690-full-note-cs.csl (#5033)
3af2034 Create acta-medica-peruana.csl (#5037)
dcbe494 Create historia-scribere.csl (#5038)
2174323 make addiction-biology.csl an AMA dependent (#5028)
b01aea8 Update ios-press-books.csl (#5030)
ae6d0e2 add doi for article-journal for ASA.csl (#5031)
d537025 Create organised-sound.csl (#5032)
ef4d15e Create independent EMBO Press
640fdac Create forensic-anthropology.csl (#5026)
3dc5157 Update amerindia.csl (#5027)
fca38a2 Create journal-of-the-botanical-research-institute-of-texas.csl (#5029)
facc3f9 Aging &Disease: remove unused macros
661e9fa Sort aging and disease by cite number
8746709 show issue numbers in springer basic author-date style (#4854)
c358b17 Update Journal of Universal Computer Science

git-subtree-dir: src/main/resources/csl-styles
git-subtree-split: 6fab78b
    github actions committed Oct 1, 2020
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  3. Remove "online" prefix (#6968)

    @Toromtomtom
    Toromtomtom committed Oct 1, 2020
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  4. Update journalList.mv

    JabRef refresh journal lists [bot] committed Oct 1, 2020
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Commits on Oct 3, 2020

  1. Mark medra test as fetcher test (#6969) 

    Fix wrong entry
    @Siedlerchr
    Siedlerchr committed Oct 3, 2020
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  2. Fix linting issue

    @koppor
    koppor committed Oct 3, 2020
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  3. downgrade richtextfx to fix entering of curly braces in mac in code a… 

    …rea (#6965)

Co-authored-by: Oliver Kopp <kopp.dev@gmail.com>
    @Siedlerchr @koppor
    Siedlerchr and koppor committed Oct 3, 2020
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  4. Fix locating jabref in jabrefHost.py (#6963) 

    shutil.which() returns an str and not a pathlib.Path. Therefore, we need
to check if which() actually returns something and if so, we should
convert it to a pathlib.Path such that JABREF_PATH is always of the same
type.

Also, try locating JabRef in addition to jabref in the user's PATH.
    @michaellass
    michaellass committed Oct 3, 2020
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  5. Add multi-sentence title formatting to sentence case and title case (#… 

    …6872)
    @tmrd993
    tmrd993 committed Oct 3, 2020
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  6. Fix AUTHORS

    @koppor
    koppor committed Oct 3, 2020
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  7. Fix could not connect to LO on Mac OSX (#6970) 

    * Fix could not connect to LO on Mac OSX

Refactor

* add link to pr

* Update CHANGELOG.md

Co-authored-by: Oliver Kopp <kopp.dev@gmail.com>

* Update CHANGELOG.md

Co-authored-by: Oliver Kopp <kopp.dev@gmail.com>

* add Logger for exception

* fix changelog dot

Co-authored-by: Oliver Kopp <kopp.dev@gmail.com>
    @Siedlerchr @koppor
    Siedlerchr and koppor committed Oct 3, 2020
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  8. Adapt test

    @koppor
    koppor committed Oct 3, 2020
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Commits on Oct 4, 2020

  1. Fix the paths in chrome snap hooks (#6978)

    @LyzardKing
    LyzardKing committed Oct 4, 2020
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  2. Adapt the short DOI regex (#6977)

    @Toromtomtom
    Toromtomtom committed Oct 4, 2020
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  3. Pin application insights (#6972)

    @koppor
    koppor committed Oct 4, 2020
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  4. Fix INSPIRE fetcher and short doi fetcher tests (#6975) 

    Arxiv Test is failing with the search phrase, because both queries return the same result
    @Siedlerchr
    Siedlerchr committed Oct 4, 2020
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  5. Fix/arxiv test (#6980) 

    * Squashed 'src/main/resources/csl-styles/' changes from bf698ac..827b986

827b986 add DOI preprint to american-society-for-microbiology.csl (#4946)
7cab2f7 Create depro-ufs.csl (#4947)
2fcda1f Create journal-of-sport-science-and-medicine.csl (#4949)
cd457d4 Update american-marketing-association.csl (#4945)
cacc4ee Create nejm-catalyst.csl (#4943)
bd769b9 Update and rename dependent/chinese-medical-journal.csl to chinese-me… (#4941)
1f706cd Update health-services-research.csl (#4939)
76bcd1d Update journal-of-the-royal-society-of-western-australia.csl (#4932)
e79640e Create afro-asia.csl (#4934)
c601aa4 Update lancaster-university-harvard.csl (#4938)
184fd90 Update collection-du-centre-jean-berard.csl (#4936)
82f9aec fix et-al & add DOI thyroid.csl (#4937)
4af169f Create universidade-estadual-de-alagoas-uneal-abnt (#4885)
47165b3 Update and rename medical-physics.csl to dependent/medical-physics.csl (AMA) (#4905)
3cab27d Update thieme-german.csl (#4931)
eb2c977 Create zeitschrift-fur-zahnarztliche-implantologie.csl (#4925)
4adb1ea Create karstenia.csl (#4929)
530a136 Fix author substitute in Universita Cattolica

git-subtree-dir: src/main/resources/csl-styles
git-subtree-split: 827b986

* Squashed 'src/main/resources/csl-styles/' changes from 827b986..eb0d37e

eb0d37e Create natbib-plainnat-author-dat.csl (#4967)
fb1592a Update journal-of-fish-biology.csl (#4969)
f6876cb Update .travis.yml (#4970)
d6d400b Create london-review-of-international-law.csl (#4966)
d2a5ae1 Update harvard-stellenbosch-university.csl (#4965)
9c62141 Create phytopathologia-mediterranea.csl (#4964)
8ca2ea1 Update historical-materialism.csl (#4960)
80456dc Update historical-materialism.csl
be2d910 Update historical-materialism.csl
1d1cf09 Create atlande.csl (#4930)
89f41d4 Create juristische-zitierweise-oeffentliches-recht.csl (#4944)
8c677a0 Create korean-journal-of-gastroenterology.csl (#4954)
eadb950 Create historical-materialism.csl (#4955)
5553dcd Create revista-materia.csl (#4957)
d23a3ab Bug fix in APA 6 original publication macro (#4959)
66f9974 Always print publisher in APA 6th edition (#4899)
868809c Create agora.csl (#4940)
99c19c3 Update anthropologie-et-societes.csl (#4952)
ee17423 Create critical-reviews-in-solid-state-and-materials-science.csl (#4951)
7a13a7d Create korean-journal-of-internal-medicine.csl (#4953)

git-subtree-dir: src/main/resources/csl-styles
git-subtree-split: eb0d37e

* Adapt arxiv phrase test

Co-authored-by: github actions <jabrefmail+webfeedback@gmail.com>
    @DominikVoigt
    DominikVoigt and github actions committed Oct 4, 2020
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  6. Fix grammar and typos (#6979)

    @jasper-vandemalle
    jasper-vandemalle committed Oct 4, 2020
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  7. Add new author

    @koppor
    koppor committed Oct 4, 2020
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  8. Fix "irregularly losing ability to edit data in biblatex source tab" (#… 

    …6976)
    @magsilva
    magsilva committed Oct 4, 2020
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  9. Bump mariadb-java-client from 2.6.2 to 2.7.0 (#6953) 

    Bumps [mariadb-java-client](https://github.com/mariadb-corporation/mariadb-connector-j) from 2.6.2 to 2.7.0.
- [Release notes](https://github.com/mariadb-corporation/mariadb-connector-j/releases)
- [Changelog](https://github.com/mariadb-corporation/mariadb-connector-j/blob/master/CHANGELOG.md)
- [Commits](mariadb-corporation/mariadb-connector-j@2.6.2...2.7.0)

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    @dependabot
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  10. Wait for version 0.10.6 of richtextfx

    @Siedlerchr
    Siedlerchr committed Oct 4, 2020
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Commits on Oct 5, 2020

  1. Fix automerge of dependabot

    @tobiasdiez
    tobiasdiez committed Oct 5, 2020
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  2. Bump pascalgn/automerge-action from v0.10.0 to v0.11.0 (#6971) 

    Bumps [pascalgn/automerge-action](https://github.com/pascalgn/automerge-action) from v0.10.0 to v0.11.0.
- [Release notes](https://github.com/pascalgn/automerge-action/releases)
- [Commits](pascalgn/automerge-action@v0.10.0...eb9575a)

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    dependabot[bot] committed Oct 5, 2020
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  3. Bump org.beryx.jlink from 2.22.0 to 2.22.1 (#6981) 

    Bumps org.beryx.jlink from 2.22.0 to 2.22.1.

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  4. Fixed incorrect color of identity column header (#6982) 

    * 6796 fixed

* 6796 fixed

Co-authored-by: Christoph <siedlerkiller@gmail.com>
    @Gena928 @Siedlerchr
    Gena928 and Siedlerchr committed Oct 5, 2020
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Commits on Oct 6, 2020

  1. Removing "BibTeX" when not specific to BibTeX (#6983) 

    * BibTeX field => following field

* Update Changelog

* Adding issue number to changelog

* Get BibTeX data ==> Get bibliographic data

* "Get BibTeX data" ==> "Get bibliographic data"

* Localization EN

* Localizing strings in New group UI

* Adding localization strings to EN file

* Localization formatting

* Tidying up
    @mlep
    mlep committed Oct 6, 2020
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Commits on Oct 7, 2020

  1. Merge commit '8c13808' into master

    @koppor
    koppor committed Oct 7, 2020
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  2. Lint CHANGELOG.md

    @koppor
    koppor committed Oct 7, 2020
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Commits on Oct 9, 2020

  1. Rewrite guidelines to Java 15 (#6973)

    @koppor
    koppor committed Oct 9, 2020
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Commits on Oct 12, 2020

  1. Bump flowless from 0.6.1 to 0.6.2 (#7003) 

    Bumps [flowless](https://github.com/FXMisc/Flowless) from 0.6.1 to 0.6.2.
- [Release notes](https://github.com/FXMisc/Flowless/releases)
- [Changelog](https://github.com/FXMisc/Flowless/blob/master/CHANGELOG.md)
- [Commits](FXMisc/Flowless@v0.6.1...v0.6.2)

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    dependabot[bot] committed Oct 12, 2020
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  2. Bump pascalgn/automerge-action from v0.11.0 to v0.12.0 (#7006) 

    Bumps [pascalgn/automerge-action](https://github.com/pascalgn/automerge-action) from v0.11.0 to v0.12.0.
- [Release notes](https://github.com/pascalgn/automerge-action/releases)
- [Commits](pascalgn/automerge-action@v0.11.0...c9bd182)

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    @dependabot
    dependabot[bot] committed Oct 12, 2020
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  3. Bump postgresql from 42.2.16 to 42.2.17 (#7005) 

    Bumps [postgresql](https://github.com/pgjdbc/pgjdbc) from 42.2.16 to 42.2.17.
- [Release notes](https://github.com/pgjdbc/pgjdbc/releases)
- [Changelog](https://github.com/pgjdbc/pgjdbc/blob/REL42.2.17/CHANGELOG.md)
- [Commits](pgjdbc/pgjdbc@REL42.2.16...REL42.2.17)

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    dependabot[bot] committed Oct 12, 2020
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  4. Bump lucene-queryparser from 8.6.2 to 8.6.3 (#7002) 

    Bumps lucene-queryparser from 8.6.2 to 8.6.3.

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  5. Bump byte-buddy-parent from 1.10.16 to 1.10.17 (#7004) 

    Bumps [byte-buddy-parent](https://github.com/raphw/byte-buddy) from 1.10.16 to 1.10.17.
- [Release notes](https://github.com/raphw/byte-buddy/releases)
- [Changelog](https://github.com/raphw/byte-buddy/blob/master/release-notes.md)
- [Commits](raphw/byte-buddy@byte-buddy-1.10.16...byte-buddy-1.10.17)

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  6. Bump unirest-java from 3.11.00 to 3.11.01 (#7001) 

    Bumps [unirest-java](https://github.com/Kong/unirest-java) from 3.11.00 to 3.11.01.
- [Release notes](https://github.com/Kong/unirest-java/releases)
- [Changelog](https://github.com/Kong/unirest-java/blob/main/CHANGELOG.md)
- [Commits](Kong/unirest-java@v3.11.00...v3.11.01)

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  7. Enable auto sync per default for Open/Libre Office (#6985) 

    * Enable Auto Sync per default for Open/LibreOffice

* Add test for Open Office auto sync when citing per default

* Delete OpenOfficeSyncWhenCitingTest.java

Removing unnecessary test
    @IsaacRoles
    IsaacRoles committed Oct 12, 2020
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Commits on Oct 13, 2020

  1. 6848 fixed the issue of clicking collapse all expanding tree (#6993)

    @skeric
    skeric committed Oct 13, 2020
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  2. Merge parsing of bracketed patterns (#6989) 

    * Add test cases

* Fix test case use of unwanted character

* Add method injection to `expandBrackets`

* Fix logger message

* Extract methods and change parsing

Extracts code from `generateKey` as methods for readability purposes and
 switches out the parsing code for the one in `BracketedPattern`

* Codestyle improvements

* Fix use of illegal character in test case

* Add log output for PatternSyntaxException

* Fix handling unwanted characters between brackets

* Fix Checkstyle

* Add test case for incorrect regex replacement

* Add JavaDoc

* Add test case
    @k3KAW8Pnf7mkmdSMPHz27
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Commits on Oct 14, 2020

  1. Group: "Searching for keywords" searches for a single keyword ==> use… 

    … singular (#6995)
    @mlep
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  2. Jstor Fetcher (#6992)

    @joethei
    joethei committed Oct 14, 2020
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  3. try to fix DEP issue with official jdk (#7008) 

    * try with official jdk

* I hate yaml

* Downgrade to jdk 14 until the JDK 15 bug for windows is solved
    @Siedlerchr
    Siedlerchr committed Oct 14, 2020
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Commits on Oct 15, 2020

  1. Merge commit '84fcd5b00085cea315e6cc79d79ef5e2dbe74dbb' into master

    github actions committed Oct 15, 2020
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  2. Squashed 'src/main/resources/csl-styles/' changes from 6fab78b..5297abd 

    5297abd Delete wirtschaftsuniversitat-wien-interdisziplinares-institut-fur-verhaltenswissenschaftlich-orientiertes-management.csl (#5023)
4b95fd1 New style - german-yearbook-of-international-law.csl (#5052)
c74218d Update iso690-full-note-cs.csl (#5062)
e72fb75 Update associacao-brasileira-de-normas-tecnicas-ufrgs.csl (#5058)
a440a12 Ann. Rev. Astron.: Remove form="short" for URL
325772c Create european-journal-of-theology.csl (#5055)
7643924 Update society-of-biblical-literature-fullnote-bibliography.csl (#5022)
15e8a12 Update RCN-Harvard based on feedback
b9a37b7 Update harvard-university-of-westminster.csl (#5044)
7826be2 New version of the style for the History Department at the University of Lausanne (#5050)
a0c044d Reindent/reorder (#5054)

git-subtree-dir: src/main/resources/csl-styles
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  3. Update to javafx15 (#7018) 

    * Switch to javafx 15

Fixes #4947

* and also add the windows menu group

* fix syntax error
    @Siedlerchr
    Siedlerchr committed Oct 15, 2020
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  4. Update journalList.mv

    JabRef refresh journal lists [bot] committed Oct 15, 2020
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Commits on Oct 16, 2020

  1. add exception to error handler in integrity check

    @Siedlerchr
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Commits on Oct 17, 2020

  1. remove any newlines and spaces in isbn when fetching (#7023) 

    * remove any newlines and spaces in isbn when fetching
Fixes #6456

* Update IsbnFetcher.java

* Update CHANGELOG.md

* remove duplicate changelog entry
    @joethei
    joethei committed Oct 17, 2020
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Commits on Oct 18, 2020

  1. Add missing author

    @koppor
    koppor committed Oct 18, 2020
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  2. Refine information on AUTHORS

    @koppor
    koppor committed Oct 18, 2020
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  3. Journal lists need a manual update only

    @koppor
    koppor committed Oct 18, 2020
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  4. Improve error handling on GROBID server connection issues (#7026) 

    * add explicit configuration for connectTimeout in URLDownload
add information on GROBID server connection issue for user
relates to #6517 and #6891

* add CHANGELOG entry

* fix style issues detected by checkstyle

* use .toMilliseconds() is more convenient
use assertThrow is more convenient

* incorporate feedback from review
reduce detail level from user message
rework to use FetcherException instead of UncheckedIOException

* switch to debug level in order to reduce verboseness in the log
    @nitram509
    nitram509 committed Oct 18, 2020
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  5. Removed menu entry for 'Manage external file types' (#6990) (#7009)

    @schrothbn
    schrothbn committed Oct 18, 2020
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  6. Add selection of 'All Entries' group on start-up (#7014)

    @Niffler
    Niffler committed Oct 18, 2020
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  7. Add missing authors

    @koppor
    koppor committed Oct 18, 2020
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  8. Corrected shortcut (#6960)

    @Gena928
    Gena928 committed Oct 18, 2020
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Commits on Oct 19, 2020

  1. Bump guava from 29.0-jre to 30.0-jre (#7030) 

    Bumps [guava](https://github.com/google/guava) from 29.0-jre to 30.0-jre.
- [Release notes](https://github.com/google/guava/releases)
- [Commits](https://github.com/google/guava/commits)

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  2. Bump unirest-java from 3.11.01 to 3.11.02 (#7029) 

    Bumps [unirest-java](https://github.com/Kong/unirest-java) from 3.11.01 to 3.11.02.
- [Release notes](https://github.com/Kong/unirest-java/releases)
- [Changelog](https://github.com/Kong/unirest-java/blob/main/CHANGELOG.md)
- [Commits](Kong/unirest-java@v3.11.01...v3.11.02)

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  3. Bump postgresql from 42.2.17 to 42.2.18 (#7027) 

    Bumps [postgresql](https://github.com/pgjdbc/pgjdbc) from 42.2.17 to 42.2.18.
- [Release notes](https://github.com/pgjdbc/pgjdbc/releases)
- [Changelog](https://github.com/pgjdbc/pgjdbc/blob/REL42.2.18/CHANGELOG.md)
- [Commits](pgjdbc/pgjdbc@REL42.2.17...REL42.2.18)

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  4. Bump com.adarshr.test-logger from 2.1.0 to 2.1.1 (#7028) 

    Bumps com.adarshr.test-logger from 2.1.0 to 2.1.1.

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  5. Snapcraft: set version from new xml file (#7031) 

    * Try fo fix snapcraft build with debug switch

* Get version from .jpackage.xml file

* Parse .jpackage.xml file

* try to put app version to image options

Co-authored-by: Siedlerchr <siedlerkiller@gmail.com>
    @LyzardKing @Siedlerchr
    LyzardKing and Siedlerchr committed Oct 19, 2020
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Commits on Oct 20, 2020

  1. add Cleanup for copying over physcial review article id as the page n… ( 

    #7025)

* add Cleanup for copying over physcial review article id as the page number

* remove PageFieldCleanup, add private methods to DoiFetcher

* remove comment from DoiFetcherTest

* replace regex with substring and string comparison

* fix checkstyle issues

* fix checkstyle issues

* add regex to check aps doi format

* move suffix pattern to private static field

* add changelog entry

* add issue link to changelog entry
    @tmrd993
    tmrd993 committed Oct 20, 2020
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  2. Fix setting of title (and simplify BasePanel to LibraryTab) (#6129) 

    Co-authored-by: Carl Christian Snethlage <50491877+calixtus@users.noreply.github.com>
    @koppor @calixtus
    koppor and calixtus committed Oct 20, 2020
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Commits on Oct 22, 2020

  1. Support for exporting to YAML format (#7007)

    @joethei
    joethei committed Oct 22, 2020
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  2. Added error msg when isbn entry was not found (#7036)

    @tmrd993
    tmrd993 committed Oct 22, 2020
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Commits on Oct 24, 2020

  1. Add missing javafx export to controlsfx for eclipse

    @Siedlerchr
    Siedlerchr committed Oct 24, 2020
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  2. Add Reviewdog as checkstyle (#6996) 

    * Add Reviewdog as checkstyle

* try with dir

* try dir

* test witout gradle action

* test checkstyle

* use copy for reviewdog
change to PR reporter

* changke back to PR check

* fix checkstyle issue
    @Siedlerchr
    Siedlerchr committed Oct 24, 2020
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Commits on Oct 26, 2020

  1. Bump styfle/cancel-workflow-action from 0.5.0 to 0.6.0 (#7047) 

    Bumps [styfle/cancel-workflow-action](https://github.com/styfle/cancel-workflow-action) from 0.5.0 to 0.6.0.
- [Release notes](https://github.com/styfle/cancel-workflow-action/releases)
- [Commits](styfle/cancel-workflow-action@0.5.0...ce17749)

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  2. Bump mockito-core from 3.5.13 to 3.5.15 (#7044) 

    Bumps [mockito-core](https://github.com/mockito/mockito) from 3.5.13 to 3.5.15.
- [Release notes](https://github.com/mockito/mockito/releases)
- [Commits](mockito/mockito@v3.5.13...v3.5.15)

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Commits on Oct 28, 2020

  1. Add online-link detection to FileFieldParser (#7043) 

    * Add online-link detection to FileFieldParser

* Remove double space

* Remove try-catch block from control structure

* Add missing space

* Fix checkstyle violations
    @Niffler
    Niffler committed Oct 28, 2020
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  2. Add awt native open commands (#7037) 

    * Add awt native open commands

* Revert to xdg-open if the native awt operation fails.

This is used in the confined linux packages to open URLs

* Fix AllowedToUseAwt annotation use

* Use Thread to avoid swing dependency

* Use JabRefExecutorService to open files in Linux

* Add line in changelog
    @LyzardKing
    LyzardKing committed Oct 28, 2020
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Commits on Oct 29, 2020

  1. add short date formatter (#7039) 

    * add short date formatter. fixes #6579

* Update src/main/java/org/jabref/logic/layout/format/ShortMonthFormatter.java

Co-authored-by: Christoph <siedlerkiller@gmail.com>

* remove setArgument

* fixing imports

Co-authored-by: Christoph <siedlerkiller@gmail.com>
    @joethei @Siedlerchr
    joethei and Siedlerchr committed Oct 29, 2020
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Commits on Nov 1, 2020

  1. Merge commit '07026487e40ae689915bcb834838b3d8c7d160c6'

    github actions committed Nov 1, 2020
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  2. Squashed 'src/main/resources/csl-styles/' changes from 5297abd..5c376b8 

    5c376b8 Create karlstad-universitet-kau-harvard-swedish.csl (#5083)
6a62c24 Create ucl-institute-of-education-harvard.csl (#5084)
4d1bbb0 Update ferdinand-porsche-fern-fachhochschule.csl (#5073)
3a9f494 Update cureus.csl (#5087)
181c0dd Create apa-no.csl (#5059)
651ce48 Some fixes for Advanced Functional Materials (#5080)
4e3297a Acta Zoologica Hungarica: Don't demote nd particles
c659df7 Create medicina-delle-dipendenze-italian-journal-of-the-addictions.csl (#5078)
d243055 Update geografia-fisica-e-dinamica-quaternaria.csl (#5079)
1ee3809 Update mcgill-en.csl (#5076)
949cdc6 Update mcgill-fr.csl (#5075)
ee7d4e1 Create chem-catalysis.csl (#5074)
ec9faec Switch Molecular Therapy to Cell (#5070)
cf6034c Switch Elsevier to their own ad-vancouver (#5072)
78cca13 Updates in research-institute-for-nature-and-forest.csl (#4958)
68b7478 Update journal-of-neolithic-archaeology.csl (#5065)
524ba93 Create offa.csl (#5066)
9713a82 Update associacao-brasileira-de-normas-tecnicas-ufrgs-note-initials-with-ibid (#5067)
44449df Uodate associacao-brasileira-de-normas-tecnicas-ufrgs-initials.csl (#5061)
baf9efa Create İstanbul Üniversitesi Sosyal Bilimler Enstitüsü Ali Ekber Çına… (#5064)
c5c3531 Fix CORR
853a804 Major Update mcgill-fr.csl to 9th ed. (#5057)
d3e2cd9 Update mcgill-en.csl (#5056)

git-subtree-dir: src/main/resources/csl-styles
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Commits on Nov 2, 2020

  1. Bump controlsfx from 11.0.2 to 11.0.3 (#7066) 

    Bumps [controlsfx](https://bitbucket.org/controlsfx/controlsfx) from 11.0.2 to 11.0.3.
- [Commits](https://bitbucket.org/controlsfx/controlsfx/commits)

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  2. Bump mockito-core from 3.5.15 to 3.6.0 (#7067) 

    Bumps [mockito-core](https://github.com/mockito/mockito) from 3.5.15 to 3.6.0.
- [Release notes](https://github.com/mockito/mockito/releases)
- [Commits](mockito/mockito@v3.5.15...v3.6.0)

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  3. Bump checkstyle from 8.36.2 to 8.37 (#7064) 

    Bumps [checkstyle](https://github.com/checkstyle/checkstyle) from 8.36.2 to 8.37.
- [Release notes](https://github.com/checkstyle/checkstyle/releases)
- [Commits](checkstyle/checkstyle@checkstyle-8.36.2...checkstyle-8.37)

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  4. Bump bcprov-jdk15on from 1.66 to 1.67 (#7063) 

    Bumps [bcprov-jdk15on](https://github.com/bcgit/bc-java) from 1.66 to 1.67.
- [Release notes](https://github.com/bcgit/bc-java/releases)
- [Changelog](https://github.com/bcgit/bc-java/blob/master/docs/releasenotes.html)
- [Commits](https://github.com/bcgit/bc-java/commits)

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  5. Bump java-diff-utils from 4.8 to 4.9 (#7061) 

    Bumps [java-diff-utils](https://github.com/java-diff-utils/java-diff-utils) from 4.8 to 4.9.
- [Release notes](https://github.com/java-diff-utils/java-diff-utils/releases)
- [Changelog](https://github.com/java-diff-utils/java-diff-utils/blob/master/CHANGELOG.md)
- [Commits](java-diff-utils/java-diff-utils@java-diff-utils-parent-4.8...java-diff-utils-parent-4.9)

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  6. Fix 4040 link

    @koppor
    koppor committed Nov 2, 2020
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Commits on Nov 3, 2020

  1. Bump xmlunit-core from 2.7.0 to 2.8.0 (#7065) 

    Bumps [xmlunit-core](https://github.com/xmlunit/xmlunit) from 2.7.0 to 2.8.0.
- [Release notes](https://github.com/xmlunit/xmlunit/releases)
- [Changelog](https://github.com/xmlunit/xmlunit/blob/main/RELEASE_NOTES.md)
- [Commits](xmlunit/xmlunit@v2.7.0...v2.8.0)

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  2. Bump xmlunit-matchers from 2.7.0 to 2.8.0 (#7062) 

    Bumps [xmlunit-matchers](https://github.com/xmlunit/xmlunit) from 2.7.0 to 2.8.0.
- [Release notes](https://github.com/xmlunit/xmlunit/releases)
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  3. Bump unirest-java from 3.11.02 to 3.11.03 (#7060) 

    Bumps [unirest-java](https://github.com/Kong/unirest-java) from 3.11.02 to 3.11.03.
- [Release notes](https://github.com/Kong/unirest-java/releases)
- [Changelog](https://github.com/Kong/unirest-java/blob/main/CHANGELOG.md)
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  4. Bump byte-buddy-parent from 1.10.17 to 1.10.18 (#7059) 

    Bumps [byte-buddy-parent](https://github.com/raphw/byte-buddy) from 1.10.17 to 1.10.18.
- [Release notes](https://github.com/raphw/byte-buddy/releases)
- [Changelog](https://github.com/raphw/byte-buddy/blob/master/release-notes.md)
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  5. Fix Shared Database Tests (#7040) 

    * Fix Shared Database Tests

Fix FieldChangeEvent Delta computation

* Use length directly foir comparision

* upgrade postgres to 13
rename delta to majorCharacterChange

* revert unrelated change
    @Siedlerchr
    Siedlerchr committed Nov 3, 2020
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Commits on Nov 4, 2020

  1. Fix custom theme styles not applied to the entry preview (#7071) 

    * Fix custom theme styles not applied to the entry preview

Make comment more precise

* cbheckstyle

* Update CHANGELOG.md
    @Siedlerchr
    Siedlerchr committed Nov 4, 2020
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  2. Fix more 404 links

    @Siedlerchr
    Siedlerchr committed Nov 4, 2020
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  3. Fix JavaScript regexp creation

    @k3KAW8Pnf7mkmdSMPHz27
    k3KAW8Pnf7mkmdSMPHz27 committed Nov 4, 2020
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  4. Merge commit '7dafcd86eef3b9b9cb26e031951c6ea9e3649aaf'

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  5. Squashed 'src/main/resources/csl-styles/' changes from 5c376b8..f4399aa 

    f4399aa APA: match="any" bugfixes (#5092)
d0cc2c4 Add APA numeric and update BioEssays (#5089)

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  6. Merge branch 'master' into pagedFetcher

    @koppor
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  7. Remove unused supportsPaging

    @koppor
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  8. Merge pull request #6236 from JabRef/pagedFetcher

    @koppor
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Commits on Nov 5, 2020

  1. Add link to existing documentation of filed types

    @koppor
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Commits on Nov 6, 2020

  1. Fix preview settings not saved due to l10n (#7077) 

    * Fix preview settings not saved due to l10n

Introduce internal name for finding layout
Fixes #6447

* rename getInternalName
    @Siedlerchr
    Siedlerchr committed Nov 6, 2020
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  2. Follow up fix for 7077 

    Reset preview layouts on clear
    @Siedlerchr
    Siedlerchr committed Nov 6, 2020
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  3. Fix GrammarBasedSearchRule with regexp

    @k3KAW8Pnf7mkmdSMPHz27
    k3KAW8Pnf7mkmdSMPHz27 committed Nov 6, 2020
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  4. Fix JavaScript regex creation

    @k3KAW8Pnf7mkmdSMPHz27
    k3KAW8Pnf7mkmdSMPHz27 committed Nov 6, 2020
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  5. Readability improvement?

    @k3KAW8Pnf7mkmdSMPHz27
    k3KAW8Pnf7mkmdSMPHz27 committed Nov 6, 2020
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  6. Add missed negation

    @k3KAW8Pnf7mkmdSMPHz27
    k3KAW8Pnf7mkmdSMPHz27 committed Nov 6, 2020
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  7. Fix JavaScript regex pattern

    @k3KAW8Pnf7mkmdSMPHz27
    k3KAW8Pnf7mkmdSMPHz27 committed Nov 6, 2020
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  8. Special field code maintenance (#7078)

    @calixtus
    calixtus committed Nov 6, 2020
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  9. Implement Emacs key bindings (#6037) 

    Co-authored-by: Felix Luthman <34520175+felixlut@users.noreply.github.com>
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    @muachilin @felixlut
    @Zodbigt @krisgun @stevensdavid @calixtus
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  10. Add missing authors

    @koppor
    koppor committed Nov 6, 2020
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Commits on Nov 7, 2020

  1. Feature/add abstract field to complex search (#7079)

    @DominikVoigt
    DominikVoigt committed Nov 7, 2020
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Commits on Nov 8, 2020

  1. Fix only replacing unescaped forward slashes

    @k3KAW8Pnf7mkmdSMPHz27
    k3KAW8Pnf7mkmdSMPHz27 committed Nov 8, 2020
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Commits on Nov 9, 2020

  1. Bump jakarta.annotation-api from 1.3.5 to 2.0.0 

    Bumps [jakarta.annotation-api](https://github.com/eclipse-ee4j/common-annotations-api) from 1.3.5 to 2.0.0.
- [Release notes](https://github.com/eclipse-ee4j/common-annotations-api/releases)
- [Commits](jakartaee/common-annotations-api@1.3.5...2.0.0)

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  2. Bump gittools/actions from v0.9.4 to v0.9.5 (#7091) 

    Bumps [gittools/actions](https://github.com/gittools/actions) from v0.9.4 to v0.9.5.
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- [Commits](GitTools/actions@v0.9.4...ea3b60a)

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  3. Bump com.github.ben-manes.versions from 0.33.0 to 0.36.0 (#7088) 

    Bumps com.github.ben-manes.versions from 0.33.0 to 0.36.0.

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  4. Bump unirest-java from 3.11.03 to 3.11.05 (#7087) 

    Bumps [unirest-java](https://github.com/Kong/unirest-java) from 3.11.03 to 3.11.05.
- [Release notes](https://github.com/Kong/unirest-java/releases)
- [Changelog](https://github.com/Kong/unirest-java/blob/main/CHANGELOG.md)
- [Commits](Kong/unirest-java@v3.11.03...v3.11.05)

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  5. Add support for Microsoft Edge browser in Windows and Linux builds (#… 

    …7056)

* Add support for Microsoft Edge browser in Windows and Linux builds

* Add support for Microsoft Edge browser in Mac builds

* Add microsoft edge support in CHANGELOG.md

Co-authored-by: Christoph <siedlerkiller@gmail.com>
    @LyzardKing @Siedlerchr
    LyzardKing and Siedlerchr committed Nov 9, 2020
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Commits on Nov 10, 2020

  1. Rename Firefox extension file in Windows (#7092)

    @LyzardKing
    LyzardKing committed Nov 10, 2020
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  2. Fix endnote importer when keyword style is null (#7084)

    @Siedlerchr
    Siedlerchr committed Nov 10, 2020
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  3. Try removing annotations from module info

    @tobiasdiez
    tobiasdiez committed Nov 10, 2020
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  4. Bump lucene-queryparser from 8.6.3 to 8.7.0 (#7089) 

    Bumps lucene-queryparser from 8.6.3 to 8.7.0.

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  5. Extract String constants

    @k3KAW8Pnf7mkmdSMPHz27
    k3KAW8Pnf7mkmdSMPHz27 committed Nov 10, 2020
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  6. Fix codestyle

    @k3KAW8Pnf7mkmdSMPHz27
    k3KAW8Pnf7mkmdSMPHz27 committed Nov 10, 2020
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  7. Refine default preview

    @koppor
    koppor committed Nov 10, 2020
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  8. Remove unused local variable

    @k3KAW8Pnf7mkmdSMPHz27
    k3KAW8Pnf7mkmdSMPHz27 committed Nov 10, 2020
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  9. Add comments to the regular expression literal

    @k3KAW8Pnf7mkmdSMPHz27
    k3KAW8Pnf7mkmdSMPHz27 committed Nov 10, 2020
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Commits on Nov 13, 2020

  1. Add test for GrammarBasedSearchRule

    @k3KAW8Pnf7mkmdSMPHz27
    k3KAW8Pnf7mkmdSMPHz27 committed Nov 13, 2020
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  2. Fixed setting title of saved new library

    @calixtus
    calixtus committed Nov 13, 2020
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Commits on Nov 14, 2020

  1. Fixed setting title of saved new library (#7095)

    @Siedlerchr
    Siedlerchr committed Nov 14, 2020
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  2. fix antlr grammar generation

    @Siedlerchr
    Siedlerchr committed Nov 14, 2020
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  3. Remove custom Antlr plugin 

    Update to gradle 6.5

Make @koppor happy
    @Siedlerchr
    Siedlerchr committed Nov 14, 2020
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  4. Fix Group color not imported after closing the app (#7096)

    @HoussemNasri @koppor
    HoussemNasri authored and koppor committed Nov 14, 2020
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  5. Add new author

    @koppor
    koppor committed Nov 14, 2020
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Commits on Nov 15, 2020

  1. Merge commit '32761d98278285088c5b67bac012e785b9eb7b84'

    github actions committed Nov 15, 2020
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  2. Squashed 'src/main/resources/csl-styles/' changes from f4399aa..55200d0 

    55200d0 Create computational-intelligence.csl (#5102)
6d2efc3 Merge branch 'master' of github.com:citation-style-language/styles
60ab0fb Add Steinbeis SMI
d5e0130 Add AAQR Style
d964f9b Create bitonline-publikationen.csl (#5090)
0dc1a56 Add "APA 7th edition" to Norsk APA style titles (#5098)
3b6aaf7 Update norsk-apa-manual.csl (#5095)
0139c63 Create technische-universitat-dresden-betriebswirtschaftslehre-rechnungswesen-controlling.csl (#5034)
fdc4497 Update universidade-estadual-de-alagoas-abnt (#5085)
afdc2ea Create revista-espanola-de-nutricion-humana-y-dietetica.csl (#5082)
939189d Create citation-compass-apa-note-no.csl (#5060)
414f5e6  brazilian-journal-of-veterinary-research: add bib sorting (#5091)
dbae9d7 Add DOI to Thieme German

git-subtree-dir: src/main/resources/csl-styles
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  3. remove spaces, udpate jlink plugin

    @Siedlerchr
    Siedlerchr committed Nov 15, 2020
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  4. set module name

    @Siedlerchr
    Siedlerchr committed Nov 15, 2020
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  5. fix tab, try with setting mac package identifier

    @Siedlerchr
    Siedlerchr committed Nov 15, 2020
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  6. Feature/enable paginated fetchers (#7082)

    @DominikVoigt
    DominikVoigt committed Nov 15, 2020
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Commits on Nov 16, 2020

  1. Bump org.beryx.jlink from 2.22.1 to 2.22.3 

    Bumps org.beryx.jlink from 2.22.1 to 2.22.3.

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    dependabot[bot] committed Nov 16, 2020
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  2. Bump gittools/actions from v0.9.5 to v0.9.6 (#7104)

    @dependabot
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  3. add mac package identifier command

    @Siedlerchr
    Siedlerchr committed Nov 16, 2020
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  4. Merge pull request #7103 from JabRef/dependabot/gradle/org.beryx.jlin… 

    …k-2.22.3

Bump org.beryx.jlink from 2.22.1 to 2.22.3
    @Siedlerchr
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  5. Merge branch 'master' into updateAntlrTask

    @Siedlerchr
    Siedlerchr committed Nov 16, 2020
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  6. Merge pull request #7097 from JabRef/updateAntlrTask 

    Update antlr task + gradle
    @Siedlerchr
    Siedlerchr committed Nov 16, 2020
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Commits on Nov 17, 2020

  1. Try to fix linux build 

    increase gradle heap
    @Siedlerchr
    Siedlerchr committed Nov 17, 2020
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  2. Update git Version spec 

    Fix for the set env disable
    @Siedlerchr
    Siedlerchr committed Nov 17, 2020
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  3. fix version spec

    @Siedlerchr
    Siedlerchr committed Nov 17, 2020
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  4. try again with memory increasing

    @Siedlerchr
    Siedlerchr committed Nov 17, 2020
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  5. and again

    @Siedlerchr
    Siedlerchr committed Nov 17, 2020
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  6. Fix version spec for upload

    @Siedlerchr
    Siedlerchr committed Nov 17, 2020
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  7. remove commandline args for gradlew, seem to interfer 

    fix version spec
    @Siedlerchr
    Siedlerchr committed Nov 17, 2020
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  8. try without module name

    @Siedlerchr
    Siedlerchr committed Nov 17, 2020
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  9. Merge pull request #7107 from JabRef/revertModularity 

    Try to fix linux build
    @Siedlerchr
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Commits on Nov 18, 2020

  1. Bump xmlunit-matchers from 2.8.0 to 2.8.1 (#7101) 

    Bumps [xmlunit-matchers](https://github.com/xmlunit/xmlunit) from 2.8.0 to 2.8.1.
- [Release notes](https://github.com/xmlunit/xmlunit/releases)
- [Changelog](https://github.com/xmlunit/xmlunit/blob/main/RELEASE_NOTES.md)
- [Commits](xmlunit/xmlunit@v2.8.0...v2.8.1)

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  2. Bump xmlunit-core from 2.8.0 to 2.8.1 

    Bumps [xmlunit-core](https://github.com/xmlunit/xmlunit) from 2.8.0 to 2.8.1.
- [Release notes](https://github.com/xmlunit/xmlunit/releases)
- [Changelog](https://github.com/xmlunit/xmlunit/blob/main/RELEASE_NOTES.md)
- [Commits](xmlunit/xmlunit@v2.8.0...v2.8.1)

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  3. Merge pull request #7102 from JabRef/dependabot/gradle/org.xmlunit-xm… 

    …lunit-core-2.8.1

Bump xmlunit-core from 2.8.0 to 2.8.1
    @Siedlerchr
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Commits on Nov 19, 2020

  1. Merge pull request #7093 from JabRef/refine-default-preview 

    Refine default preview
    @Siedlerchr
    Siedlerchr committed Nov 19, 2020
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Commits on Nov 20, 2020

  1. Merge pull request #7090 from JabRef/dependabot/gradle/jakarta.annota… 

    …tion-jakarta.annotation-api-2.0.0

Bump jakarta.annotation-api from 1.3.5 to 2.0.0
    @Siedlerchr
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  2. Add link to unit testing

    @koppor
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Commits on Nov 21, 2020

  1. Revert "Bump jakarta.annotation-api from 1.3.5 to 2.0.0"

    @Siedlerchr
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  2. Merge pull request #7113 from JabRef/revert-7090-dependabot/gradle/ja… 

    …karta.annotation-jakarta.annotation-api-2.0.0

Revert deletion of jakarta  annotation
    @Siedlerchr
    Siedlerchr committed Nov 21, 2020
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  3. Merge pull request #7073 from k3KAW8Pnf7mkmdSMPHz27/fix-for-issue-6777 

    Fixes exception in preview using regexp search and regexp search without specified field
    @Siedlerchr
    Siedlerchr committed Nov 21, 2020
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  4. Added runLater to selection of AllEntries on Opening the GroupsPanel

    @calixtus
    calixtus committed Nov 21, 2020
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  5. Fixed failing tests

    @calixtus
    calixtus committed Nov 21, 2020
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  6. Merge pull request #7115 from JabRef/hotfix-7114 

    Fixes NPE on opening GroupPanel
    @Siedlerchr
    Siedlerchr committed Nov 21, 2020
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Commits on Nov 23, 2020

  1. Bump appleboy/ssh-action from v0.1.3 to v0.1.4 (#7118)

    @dependabot
    dependabot[bot] committed Nov 23, 2020
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  2. Fix saving in codeArea without leaving the field (#7116)

    @Siedlerchr
    Siedlerchr committed Nov 23, 2020
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  3. Welcome Dominik ✌

    @koppor
    koppor committed Nov 23, 2020
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Commits on Nov 25, 2020

  1. Update Java Version

    @LinusDietz
    LinusDietz committed Nov 25, 2020
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  2. Add tracking

    @koppor
    koppor committed Nov 25, 2020
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  3. Enable automated cross library search using a cross library query lan… ( 

    #7124)

* Enable automated cross library search using a cross library query language.

Signed-off-by: Dominik Voigt <dominik.ingo.voigt@gmail.com>

* Pull Global upward through constructor.

* Pull Globals and ImportFormatPreferences up through constructor

Signed-off-by: Dominik Voigt <dominik.ingo.voigt@gmail.com>

* Integrate requested changes and fix architecture tests by correcting test classes

Signed-off-by: Dominik Voigt <dominik.ingo.voigt@gmail.com>

* Remove unused imports

Signed-off-by: Dominik Voigt <dominik.ingo.voigt@gmail.com>
    @DominikVoigt
    DominikVoigt committed Nov 25, 2020
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Commits on Nov 26, 2020

  1. Fix binding issue for the regex and case sensitive search buttons (#7125 

    )

Signed-off-by: Dominik Voigt <dominik.ingo.voigt@gmail.com>
    @DominikVoigt
    DominikVoigt committed Nov 26, 2020
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Commits on Nov 29, 2020

  1. Searchbar glyph icon colors in Dark Theme [FIXED] (#7131)

    @manassingh2611
    manassingh2611 committed Nov 29, 2020
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  2. Add githandler mock to crawler test to fix NPE (#7133) 

    Pass githandler to crawler to enable mock

Signed-off-by: Dominik Voigt <dominik.ingo.voigt@gmail.com>
    @DominikVoigt
    DominikVoigt committed Nov 29, 2020
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  3. Fix document viewer not showing first page (#7132) 

    * Fix document viewer starting with second page

Fixes  #7108

* Fix update of total page number

* Fix checkstyle
    @Siedlerchr
    Siedlerchr committed Nov 29, 2020
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  4. Add missing author

    @koppor
    koppor committed Nov 29, 2020
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Commits on Nov 30, 2020

  1. Bump checkstyle from 8.37 to 8.38 (#7142) 

    Bumps [checkstyle](https://github.com/checkstyle/checkstyle) from 8.37 to 8.38.
- [Release notes](https://github.com/checkstyle/checkstyle/releases)
- [Commits](checkstyle/checkstyle@checkstyle-8.37...checkstyle-8.38)

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  2. Bump gittools/actions from v0.9.6 to v0.9.7 (#7144) 

    Bumps [gittools/actions](https://github.com/gittools/actions) from v0.9.6 to v0.9.7.
- [Release notes](https://github.com/gittools/actions/releases)
- [Commits](GitTools/actions@v0.9.6...62f943a)

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  3. Bump mockito-core from 3.6.0 to 3.6.28 (#7135) 

    Bumps [mockito-core](https://github.com/mockito/mockito) from 3.6.0 to 3.6.28.
- [Release notes](https://github.com/mockito/mockito/releases)
- [Commits](mockito/mockito@v3.6.0...v3.6.28)

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  4. Bump classgraph from 4.8.90 to 4.8.92 (#7139) 

    Bumps [classgraph](https://github.com/classgraph/classgraph) from 4.8.90 to 4.8.92.
- [Release notes](https://github.com/classgraph/classgraph/releases)
- [Commits](classgraph/classgraph@classgraph-4.8.90...classgraph-4.8.92)

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  5. Bump mariadb-java-client from 2.7.0 to 2.7.1 (#7134) 

    Bumps [mariadb-java-client](https://github.com/mariadb-corporation/mariadb-connector-j) from 2.7.0 to 2.7.1.
- [Release notes](https://github.com/mariadb-corporation/mariadb-connector-j/releases)
- [Changelog](https://github.com/mariadb-corporation/mariadb-connector-j/blob/master/CHANGELOG.md)
- [Commits](https://github.com/mariadb-corporation/mariadb-connector-j/commits)

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  6. Bump antlr4 from 4.8-1 to 4.9 (#7138) 

    Bumps [antlr4](https://github.com/antlr/antlr4) from 4.8-1 to 4.9.
- [Release notes](https://github.com/antlr/antlr4/releases)
- [Changelog](https://github.com/antlr/antlr4/blob/master/CHANGES.txt)
- [Commits](https://github.com/antlr/antlr4/commits/4.9)

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  7. Bump antlr4-runtime from 4.8-1 to 4.9 (#7136) 

    Bumps [antlr4-runtime](https://github.com/antlr/antlr4) from 4.8-1 to 4.9.
- [Release notes](https://github.com/antlr/antlr4/releases)
- [Changelog](https://github.com/antlr/antlr4/blob/master/CHANGES.txt)
- [Commits](https://github.com/antlr/antlr4/commits/4.9)

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Commits on Dec 1, 2020

  1. Squashed 'src/main/resources/csl-styles/' changes from 55200d0..a20406d 

    a20406d Added name of the editors of a given edition (#5140)
9881fc5 Ping on push, not PR, document role of dist-updater (#5137)
04668cc Create nouvelles-perspectives-en-sciences-sociales.csl (#5063)
1d94e21 Update bursa-uludag-universitesi-saglik-bilimleri-enstitusu.csl (#5047)
84f3893 Add Harvard style for Metropolia University of Applied Sciences (#5086)
8e43e79 Create opto-electronic-advances.csl (#5135)
36e4fba Update society-for-american-archaeology.csl (#5124)
69ca360 St. Paul Canon Law new style (#5138)
b490ab0 Update and rename st-paul-university-faculty-of-canon-law.csl to saint-paul-university-faculty-of-canon-law.csl
b498116 There is no en-CA locale
3c35f28 Metadata
7059cca Create tu-dortmund-agvm.csl (#5088)
c321c98 Create new Citation type (#5093)
a7edc8d Update international-organization.csl (#5103)
3d1a052 The AWS load balancer is messing things up (#5133)
ca3839b Fix sort by a single macro (#5136)
5d1a7e8 Update chungara-revista-de-antropologia-chilena.csl (#5123)
cd75d5d ping distribution-updater (#5132)
dcf473a Update wirtschaftsuniversitat-wien-health-care-management.csl (#5125)
a87085e Fix Harvard Praxisforschung Editors (#5130)
d4176ca Switch automated tests to Github Actions (#5111)
726d0d8 Radiology, MPP, CORR -- small fixes: https://forums.zotero.org/discussion/85883/doi-radiology#latest https://forums.zotero.org/discussion/51058/style-request-molecular-plant-pathology#latest https://forums.zotero.org/discussion/85678/citing-style-clinical-orthopaedics-and-related-research#latest
e23db68 Update to la-trobe-university-harvard style (#5119)
c54b278 Create wirtschaftsuniversitat-wien-health-care-management.csl (#5110)
62fb019 Create austral-entomology.csl (#5118)
afa328c Update iso690-author-date-en.csl (#5113)
5468dce Update iso690-author-date-fr-no-abstract.csl (#5112)
98af86c Update iso690-numeric-fr.csl (#5115)
09f84c4 Update iso690-author-date-fr.csl (#5114)
178a9e4 Fix current biology to superscript
1fa5ce7 Create droit-belge-centre-de-droit-prive-ulb.csl (#5107)
3a6a4bc Fix file modes (#5106)
48f50e5 Create chungara-revista-de-antropologia-chilena.csl (#5096)
1e848f8 Create the-journal-of-the-indian-law-institute.csl (#5100)
856524c Create molecular-biology.csl (#5101)
eeebbf4 Create harvard-harper-adams-university.csl (#5104)
d90993d Fix tests
d4037bf WIP: St Paul Canon Law style

git-subtree-dir: src/main/resources/csl-styles
git-subtree-split: a20406d
    github actions committed Dec 1, 2020
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  2. Merge commit 'ac1ccad12048b3753d9e4d8da7ffdff4dbc90294'

    github actions committed Dec 1, 2020
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  3. Add IdBasedSearchFetcher to jstor (#7145)

    @joethei
    joethei committed Dec 1, 2020
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Commits on Dec 2, 2020

  1. Update to libre office 7.0.3 (#7150) 

    remove custom lib merging
    @Siedlerchr
    Siedlerchr committed Dec 2, 2020
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Commits on Dec 3, 2020

  1. Fix remembering password for sql db (#7154) 

    Fixes #6869

Add misisng binding
    @Siedlerchr
    Siedlerchr committed Dec 3, 2020
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  2. remove jython (#7155)

    @Siedlerchr
    Siedlerchr committed Dec 3, 2020
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  3. Revert "remove jython (#7155)" (#7156) 

    This reverts commit 88b278c.
    @Siedlerchr
    Siedlerchr committed Dec 3, 2020
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Commits on Dec 4, 2020

  1. Fix for issue 6959 (#7151) 

    * Add needsSharedDatabase to validate if DatabaseLocation is shared

* Update CHANGELOG.md with fix for pullingChangesFromSharedDb exception

* Refactor needsSharedDatabase to use EasyBind.map

* Change Boolean Expression for validation to simplify

* Remove whitespace to meet checkstyle criteria

* Refactor import order to meet checkstyle criteria

* Add blankline after heading to meet checkstyle criteria

Co-authored-by: luis-valdez <lvaldez@nearsoft.com>
    @luis-valdez
    luis-valdez and luis-valdez committed Dec 4, 2020
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  2. Fixed issue in PreviewView for number textfield (#7158) 

    * Fixed issue in PreviewView in number textfield its displayed 'number', now display an integer instead

* Removed curly braces from din1505winword.article.layout
    @JohanDelValleV
    JohanDelValleV committed Dec 4, 2020
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  3. Remove obsolete hint

    @Siedlerchr
    Siedlerchr committed Dec 4, 2020
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Commits on Dec 5, 2020

  1. Add missing authors

    @koppor
    koppor committed Dec 5, 2020
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  2. remove jython (#7157)

    @Siedlerchr
    Siedlerchr committed Dec 5, 2020
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Commits on Dec 6, 2020

  1. Improve library loading UX (#7119) 

    * refactoring LibraryTab to be able to create an empty tab and feed it data when it's available

* applying the improvement when opening database using action

* checkstyle

* add exception parameter to error dialog

* Adding DataLoadingTask to LibraryTab

* Add getter for dataLoadingTask

* Fixing memory leak by canceling dataLoadingTask when tab is closed

* Relocate LibraryTab method trackOpenNewDatabase() to OpenDatabaseAction

* Refactor LibraryTab to handle dataLoadingTask callbacks

* Put performPostOpenActions() before feedData() for performance reasons

* Fix groups pane not updating bug

* Cleanup code

* Extracted JabRefPreferences, fixed imports

* Extracted JabRefPreferences, fixed imports, removed dead code, shortened method name

Co-authored-by: Carl Christian Snethlage <50491877+calixtus@users.noreply.github.com>
Co-authored-by: Carl Christian Snethlage <cc.snethlage@gmail.com>
    @HoussemNasri @calixtus
    3 people committed Dec 6, 2020
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  2. Fix javadoc plugin (#7163) 

    Refs java9-modularity/gradle-modules-plugin#170
    @Siedlerchr
    Siedlerchr committed Dec 6, 2020
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Commits on Dec 7, 2020

  1. Bump classgraph from 4.8.92 to 4.8.93 (#7166) 

    Bumps [classgraph](https://github.com/classgraph/classgraph) from 4.8.92 to 4.8.93.
- [Release notes](https://github.com/classgraph/classgraph/releases)
- [Commits](classgraph/classgraph@classgraph-4.8.92...classgraph-4.8.93)

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  2. New Crowdin updates (#7167) 

    * New translations JabRef_en.properties (French)

* New translations JabRef_en.properties (Russian)

* New translations JabRef_en.properties (Persian)

* New translations JabRef_en.properties (Indonesian)

* New translations JabRef_en.properties (Portuguese, Brazilian)

* New translations JabRef_en.properties (Vietnamese)

* New translations JabRef_en.properties (Chinese Simplified)

* New translations JabRef_en.properties (Turkish)

* New translations JabRef_en.properties (Swedish)

* New translations JabRef_en.properties (Portuguese)

* New translations JabRef_en.properties (Spanish)

* New translations JabRef_en.properties (Polish)

* New translations JabRef_en.properties (Norwegian)

* New translations JabRef_en.properties (Dutch)

* New translations JabRef_en.properties (Japanese)

* New translations JabRef_en.properties (Italian)

* New translations JabRef_en.properties (Greek)

* New translations JabRef_en.properties (German)

* New translations JabRef_en.properties (Danish)

* New translations JabRef_en.properties (Tagalog)
    @Siedlerchr
    Siedlerchr committed Dec 7, 2020
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  3. Bump tika-core from 1.24.1 to 1.25 (#7165) 

    * Bump tika-core from 1.24.1 to 1.25

Bumps [tika-core](https://github.com/apache/tika) from 1.24.1 to 1.25.
- [Release notes](https://github.com/apache/tika/releases)
- [Changelog](https://github.com/apache/tika/blob/main/CHANGES.txt)
- [Commits](apache/tika@1.24.1...1.25)

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* fix module name of tika

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    dependabot[bot] and Siedlerchr committed Dec 7, 2020
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  4. Update stale.yml (#7122) 

    Co-authored-by: Tobias Diez <tobiasdiez@gmx.de>
Co-authored-by: Dominik Voigt <dominik.ingo.voigt@gmail.com>
    @koppor @tobiasdiez @DominikVoigt
    3 people committed Dec 7, 2020
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  5. Fix file not linked after DL from fulltext fetcher (#7162)

    @Siedlerchr
    Siedlerchr committed Dec 7, 2020
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  6. Changed context menu item order for library tabs (#7171)

    @calixtus
    calixtus committed Dec 7, 2020
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  7. Fixed setting of tab title in wrong thread (#7170)

    @Siedlerchr
    Siedlerchr committed Dec 7, 2020
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Commits on Dec 9, 2020

  1. Fixed context menu of linked files not updated (#7174) 

    * Fixed context menu of linked files not updated

* Added some eyecandy and CHANGELOG.md

* Checkstyle
    @calixtus
    calixtus committed Dec 9, 2020
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Commits on Dec 12, 2020

  1. Disable SLR in UI until #7126 is merged (#7179)

    @DominikVoigt
    DominikVoigt committed Dec 12, 2020
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Commits on Dec 13, 2020

  1. Remove processResources to speedup build (#7183)

    @koppor
    koppor committed Dec 13, 2020
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Commits on Dec 14, 2020

  1. #7127

    @PremKolar
    PremKolar committed Dec 14, 2020
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  2. Bump unirest-java from 3.11.05 to 3.11.06 (#7189) 

    Bumps [unirest-java](https://github.com/Kong/unirest-java) from 3.11.05 to 3.11.06.
- [Release notes](https://github.com/Kong/unirest-java/releases)
- [Changelog](https://github.com/Kong/unirest-java/blob/main/CHANGELOG.md)
- [Commits](Kong/unirest-java@v3.11.05...v3.11.06)

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    @dependabot
    dependabot[bot] committed Dec 14, 2020
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  3. Bump classgraph from 4.8.93 to 4.8.94 (#7188) 

    Bumps [classgraph](https://github.com/classgraph/classgraph) from 4.8.93 to 4.8.94.
- [Release notes](https://github.com/classgraph/classgraph/releases)
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  4. Bump org.eclipse.jgit from 5.9.0.202009080501-r to 5.10.0.20201208095… 

    …5-r (#7187)

Bumps org.eclipse.jgit from 5.9.0.202009080501-r to 5.10.0.202012080955-r.

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  5. Fix newly added entry not synced to db (#7178) 

    * Fix newly added entry not synced to db


Newly added entries have empty fields; don't update the field table to prevent SQL Exception
Fix shared entry not found by id
use left outer join for this

* fix checkstyle

* fix wording

* add tests for fix

* adjust test
    @Siedlerchr
    Siedlerchr committed Dec 14, 2020
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  6. Extraction of Globals.prefs.put and .get (#7121) 

    Co-authored-by: Siedlerchr <siedlerkiller@gmail.com>
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    3 people committed Dec 14, 2020
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  7. Merge branch 'shortDOIexceptionsFix_issue7127' of https://github.com/… 

    …PremKolar/jabref into PremKolar-shortDOIexceptionsFix_issue7127
    @calixtus
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  8. Changed tests to parameterized tests

    @calixtus
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  9. Added missing test

    @calixtus
    calixtus committed Dec 14, 2020
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  10. New Crowdin updates (#7192)

    @Siedlerchr
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Commits on Dec 16, 2020

  1. New Crowdin updates (#7198) 

    * New translations JabRef_en.properties (French)

* New translations JabRef_en.properties (Spanish)

* New translations JabRef_en.properties (Italian)

* New translations JabRef_en.properties (Russian)
    @Siedlerchr
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Commits on Dec 19, 2020

  1. New translations JabRef_en.properties (Turkish) (#7204)

    @Siedlerchr
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  2. Fix pdf content importer exception if DOI is empty (#7207)

    @Siedlerchr
    Siedlerchr committed Dec 19, 2020
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  3. Improvements for Entry Preview (in the context of #7083 and in additi… 

    …on to #7093) (#7185)

* Update JabRefPreferences.java

Modifications in Entry Preview (7093 and 7083)

* Update JabRefPreferences.java

Minor Correction

* Additions for #7185

"=" deleted
    @AtrusRiven
    AtrusRiven committed Dec 19, 2020
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Commits on Dec 20, 2020

  1. Remove field check for journal abbrev in entry editor (#7208) 

    * Remove journal abbrev deteted in entry editor

Fixes  #3925

* add changelog
    @Siedlerchr
    Siedlerchr committed Dec 20, 2020
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  2. Add missing author

    @koppor
    koppor committed Dec 20, 2020
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Commits on Dec 21, 2020

  1. Bump org.beryx.jlink from 2.22.3 to 2.23.0 (#7212) 

    Bumps org.beryx.jlink from 2.22.3 to 2.23.0.

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  2. Bump archunit-junit5-engine from 0.14.1 to 0.15.0 (#7215) 

    Bumps [archunit-junit5-engine](https://github.com/TNG/ArchUnit) from 0.14.1 to 0.15.0.
- [Release notes](https://github.com/TNG/ArchUnit/releases)
- [Commits](TNG/ArchUnit@v0.14.1...v0.15.0)

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  3. Bump byte-buddy-parent from 1.10.18 to 1.10.19 (#7216) 

    Bumps [byte-buddy-parent](https://github.com/raphw/byte-buddy) from 1.10.18 to 1.10.19.
- [Release notes](https://github.com/raphw/byte-buddy/releases)
- [Changelog](https://github.com/raphw/byte-buddy/blob/master/release-notes.md)
- [Commits](raphw/byte-buddy@byte-buddy-1.10.18...byte-buddy-1.10.19)

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  4. Bump classgraph from 4.8.94 to 4.8.97 (#7211) 

    Bumps [classgraph](https://github.com/classgraph/classgraph) from 4.8.94 to 4.8.97.
- [Release notes](https://github.com/classgraph/classgraph/releases)
- [Commits](classgraph/classgraph@classgraph-4.8.94...classgraph-4.8.97)

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  5. Bump xmpbox from 2.0.21 to 2.0.22 (#7217) 

    Bumps xmpbox from 2.0.21 to 2.0.22.

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  6. Bump guava from 30.0-jre to 30.1-jre (#7218) 

    Bumps [guava](https://github.com/google/guava) from 30.0-jre to 30.1-jre.
- [Release notes](https://github.com/google/guava/releases)
- [Commits](https://github.com/google/guava/commits)

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  7. Bump unoloader from 7.0.3 to 7.0.4 (#7214) 

    Bumps unoloader from 7.0.3 to 7.0.4.

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  8. Bump archunit-junit5-api from 0.14.1 to 0.15.0 (#7220) 

    Bumps [archunit-junit5-api](https://github.com/TNG/ArchUnit) from 0.14.1 to 0.15.0.
- [Release notes](https://github.com/TNG/ArchUnit/releases)
- [Commits](TNG/ArchUnit@v0.14.1...v0.15.0)

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  9. Bump fontbox from 2.0.21 to 2.0.22 (#7219) 

    Bumps fontbox from 2.0.21 to 2.0.22.

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  10. Bump pdfbox from 2.0.21 to 2.0.22 (#7213) 

    Bumps pdfbox from 2.0.21 to 2.0.22.

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  11. Fix ClipboardManager <-> Prefs ordering (#7224) 

    Co-authored-by: Dominik Voigt <dominik.ingo.voigt@gmail.com>
Co-authored-by: Siedlerchr <siedlerkiller@gmail.com>
    @koppor @DominikVoigt @Siedlerchr
    3 people committed Dec 21, 2020
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  12. Speedup processResources (#7221) 

    * Speedup processResources

Co-authored-by: Dominik Voigt <dominik.ingo.voigt@gmail.com>

* Try path without ./ at the beginning

Co-authored-by: Dominik Voigt <dominik.ingo.voigt@gmail.com>

Co-authored-by: Dominik Voigt <dominik.ingo.voigt@gmail.com>
    @koppor @DominikVoigt
    koppor and DominikVoigt committed Dec 21, 2020
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  13. Output java error on console, too (#7222) 

    * Output java error on console, too

Co-authored-by: Dominik Voigt <dominik.ingo.voigt@gmail.com>

* Use LOGGER instead of System.err

Co-authored-by: Dominik Voigt <dominik.ingo.voigt@gmail.com>

* remove check

* remove properties no longer needed

* remove from gradle

* fix l10n

Co-authored-by: Dominik Voigt <dominik.ingo.voigt@gmail.com>
Co-authored-by: Siedlerchr <siedlerkiller@gmail.com>
    @koppor @DominikVoigt @Siedlerchr
    3 people committed Dec 21, 2020
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Commits on Dec 22, 2020

  1. Fix some fetcher test (#7225) 

    * Disable composite fetcher test

Signed-off-by: Dominik Voigt <Dominik.ingo.voigt@gmail.com>

* Fix citeseerx test
Enable doi search for complex search queries

Signed-off-by: Dominik Voigt <Dominik.ingo.voigt@gmail.com>

* Fix JSTOR searchById

Signed-off-by: Dominik Voigt <Dominik.ingo.voigt@gmail.com>

* Fix TitleFetcher

Signed-off-by: Dominik Voigt <Dominik.ingo.voigt@gmail.com>

* Update src/test/java/org/jabref/logic/importer/fetcher/CompositeSearchBasedFetcherTest.java

* Add missing import

Signed-off-by: Dominik Voigt <Dominik.ingo.voigt@gmail.com>

Co-authored-by: Christoph <siedlerkiller@gmail.com>
    @DominikVoigt @Siedlerchr
    DominikVoigt and Siedlerchr committed Dec 22, 2020
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  2. New Crowdin updates (#7227) 

    * New translations JabRef_en.properties (Turkish)

* New translations JabRef_en.properties (Indonesian)

* New translations JabRef_en.properties (Portuguese, Brazilian)

* New translations JabRef_en.properties (Chinese Simplified)

* New translations JabRef_en.properties (Russian)

* New translations JabRef_en.properties (French)

* New translations JabRef_en.properties (Dutch)

* New translations JabRef_en.properties (Japanese)

* New translations JabRef_en.properties (Italian)

* New translations JabRef_en.properties (Greek)

* New translations JabRef_en.properties (German)

* New translations JabRef_en.properties (Spanish)

* New translations JabRef_en.properties (Tagalog)
    @Siedlerchr
    Siedlerchr committed Dec 22, 2020
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Commits on Dec 23, 2020

  1. fxdocs changed their URL (#7230)

    @koppor
    koppor committed Dec 23, 2020
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  2. Disable ACM, Google Scholar, JSTOR (#7229)

    @koppor
    koppor committed Dec 23, 2020
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Commits on Dec 24, 2020

  1. Add error dialog "Problem finding files" (#6842) 

    * #5890 added Error Dialog

AutoSetFileLinksUtil:
-> imported JabRefDialogService and Localization
->showErrorDialogAndWait(...)

I am currently having trouble writing a test

* Fix errorDialog AutoSetFileLinks

Fixed mistake in first commit.

.lists all exceptions
.notifies user of error via DialogService

* Fix notifying in AutoSetFileLinksAction

- add  returnFileExceptions() in AutoSetFileLinksUtil
- add if ( 'there are exceptions' ) -> notify user in AutoSetFileLinkAction (placement still unclear, might be changed later)

* Fixed checkstyle error in AutoSetFileLinksUtilTest

* Fixed import order in JabRefFrame

* Update JabRefFrame.java

* Refactored to fail fast

* Update JabRef_en.properties

* Included remarks

* Merge error

Co-authored-by: Carl Christian Snethlage <50491877+calixtus@users.noreply.github.com>
Co-authored-by: Carl Christian Snethlage <cc.snethlage@gmail.com>
    @IfIWantedTo @calixtus
    3 people committed Dec 24, 2020
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  2. Add missing author

    @koppor
    koppor committed Dec 24, 2020
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  3. Update gradle from 6.5 to 6.7.1

    @koppor
    koppor committed Dec 24, 2020
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Commits on May 10, 2021

  1. GitBook: [master] 20 pages and 50 assets modified

    @koppor @gitbook-bot
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