merge master #372

Nic-Ma · 2022-02-18T03:30:48Z

Fixes # .

Description

A few sentences describing the changes proposed in this pull request.

Status

Ready/Work in progress/Hold

Types of changes

Non-breaking change (fix or new feature that would not break existing functionality).
Breaking change (fix or new feature that would cause existing functionality to change).
New tests added to cover the changes.
Integration tests passed locally by running ./runtests.sh -f -u --net --coverage.
Quick tests passed locally by running ./runtests.sh --quick --unittests.
In-line docstrings updated.
Documentation updated, tested make html command in the docs/ folder.

Signed-off-by: Nic Ma <nma@nvidia.com>

Signed-off-by: Sebastian Penhouet <sebastian.penhouet@airamed.de> Co-authored-by: Sebastian Penhouet <sebastian.penhouet@airamed.de> Co-authored-by: Nic Ma <nma@nvidia.com>

… API (#3295) * adds traceable API Signed-off-by: Wenqi Li <wenqil@nvidia.com> * drop peek Signed-off-by: Wenqi Li <wenqil@nvidia.com> * deprecate inversekeys Signed-off-by: Wenqi Li <wenqil@nvidia.com> * inversekeys -> tracekeys Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update trace_key Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* [DLMED] add affine to dict transform Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add unit tests Signed-off-by: Nic Ma <nma@nvidia.com>

* torch version check Signed-off-by: Wenqi Li <wenqil@nvidia.com> * temp tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * additional cases Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update unit test names Signed-off-by: Wenqi Li <wenqil@nvidia.com> * remove temp tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes codeformat Signed-off-by: Wenqi Li <wenqil@nvidia.com> Co-authored-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>

* update clang-format download Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes unit test Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Signed-off-by: Nic Ma <nma@nvidia.com>

* MIL component to extract patches Signed-off-by: myron <amyronenko@nvidia.com> * MIL component to extract patches Signed-off-by: myron <amyronenko@nvidia.com> * random flag, minor fixes Signed-off-by: myron <amyronenko@nvidia.com> * minor fixes for padding Signed-off-by: myron <amyronenko@nvidia.com> * improve tests Signed-off-by: myron <amyronenko@nvidia.com> Co-authored-by: Behrooz <3968947+drbeh@users.noreply.github.com>

* 3251 Add dependency check in WSIReader (#3312) * [DLMED] add dep check Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix typo Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> Signed-off-by: myron <amyronenko@nvidia.com> * [DLMED] MILmodel PR Signed-off-by: myron <amyronenko@nvidia.com> * small updates Signed-off-by: myron <amyronenko@nvidia.com> * fix jit issues Signed-off-by: myron <amyronenko@nvidia.com> * jit fix attempt Signed-off-by: myron <amyronenko@nvidia.com> * removing Enum Signed-off-by: myron <amyronenko@nvidia.com> Co-authored-by: Nic Ma <nma@nvidia.com> Co-authored-by: Behrooz <3968947+drbeh@users.noreply.github.com>

* update pathlike obj Signed-off-by: Wenqi Li <wenqil@nvidia.com> * support of pathlike obj Signed-off-by: Wenqi Li <wenqil@nvidia.com> * review path obj Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * autofix Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes unit test Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes dep issue Signed-off-by: Wenqi Li <wenqil@nvidia.com>

…_keys is True (#3325) * [DLMED] enhance no keys for allow_missing_keys Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com>

Signed-off-by: Nic Ma <nma@nvidia.com>

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* drop pytorch 1.5.x Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update premerge gpu Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* [DLMED] optimize astype Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] improve astype Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix flake8 Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] simiplify AsDiscrete transform Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update tests Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add examples Signed-off-by: Nic Ma <nma@nvidia.com>

Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com>

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* [DLMED] add wrap_sequence Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update default value Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix tests Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix typo Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add more tests Signed-off-by: Nic Ma <nma@nvidia.com>

Signed-off-by: Nic Ma <nma@nvidia.com>

* Add tiffile and imagecodes to build option dependencies Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * update optional dep Signed-off-by: Wenqi Li <wenqil@nvidia.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com>

Signed-off-by: myron <amyronenko@nvidia.com>

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* Adding smooth field transforms Signed-off-by: Eric Kerfoot <eric.kerfoot@kcl.ac.uk> * Adding smooth field transforms Signed-off-by: Eric Kerfoot <eric.kerfoot@kcl.ac.uk> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Adding smooth field transforms Signed-off-by: Eric Kerfoot <eric.kerfoot@kcl.ac.uk> * Adding smooth field transforms Signed-off-by: Eric Kerfoot <eric.kerfoot@kcl.ac.uk> * Updates to smooth field transforms Signed-off-by: Eric Kerfoot <eric.kerfoot@kcl.ac.uk> * Updates to smooth field transforms Signed-off-by: Eric Kerfoot <eric.kerfoot@kcl.ac.uk> * Updates to smooth field transforms Signed-off-by: Eric Kerfoot <eric.kerfoot@kcl.ac.uk> * Updates to smooth field transforms Signed-off-by: Eric Kerfoot <eric.kerfoot@kcl.ac.uk> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com>

Co-authored-by: dongy <dongy@nvidia.com>

* fixes typos in docstring Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes type errors Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes the docstrings Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes typo Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com>

* option to zip_longest Signed-off-by: Wenqi Li <wenqil@nvidia.com> * adds a pad option Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes batch size Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* ignore 60.6.0 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * workaround #3752 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes windows issue Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* [DLMED] add HashCacheDataset Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add more test Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] skip min test Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix flake8 Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com>

* [DLMED] enhance missing key error Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update doc Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] add check for devices Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] enhance logger Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add more tests Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update doc Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix packaging test Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] remove typo Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] totally update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update handlers Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update tutorial link Signed-off-by: Nic Ma <nma@nvidia.com>

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* 3616 test downloading issues Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* fixes test Signed-off-by: Wenqi Li <wenqil@nvidia.com> * skip when downloading fails Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* [DLMED] add save_state utility Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add atomic and func Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] refactor saving logic Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix flake8 Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] restore persistent dataset Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] simplify kwargs Signed-off-by: Nic Ma <nma@nvidia.com>

* make vit support torchscript Signed-off-by: Yiheng Wang <vennw@nvidia.com> * add torch version restriction Signed-off-by: Yiheng Wang <vennw@nvidia.com> * change skip decorator order Signed-off-by: Yiheng Wang <vennw@nvidia.com> * remove extra cls Signed-off-by: Yiheng Wang <vennw@nvidia.com>

…g_saver/writer (#3773) * update saveimage and writer selector Signed-off-by: Wenqi Li <wenqil@nvidia.com> * more tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * more tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * adds saving loading tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes #3783 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * enhance import checks Signed-off-by: Wenqi Li <wenqil@nvidia.com> * warn to exception; int check Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes #3787 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * unit testing Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com>

* update largest cc function Signed-off-by: Dong Yang <dongy@dongy-mlt.client.nvidia.com> * update largest cc function Signed-off-by: Dong Yang <dongy@dongy-mlt.client.nvidia.com> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update largest cc function Signed-off-by: Dong Yang <dongy@dongy-mlt.client.nvidia.com> * update largest cc function Signed-off-by: Dong Yang <dongy@dongy-mlt.client.nvidia.com> * update largest cc function Signed-off-by: Dong Yang <dongy@dongy-mlt.client.nvidia.com> * update largest cc function Signed-off-by: Dong Yang <dongy@dongy-mlt.client.nvidia.com> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update largest cc function Signed-off-by: Dong Yang <dongy@dongy-mlt.client.nvidia.com> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update largest cc function Signed-off-by: Dong Yang <dongy@dongy-mlt.client.nvidia.com> * update largest cc function Signed-off-by: Dong Yang <dongy@dongy-mlt.client.nvidia.com> * update largest cc function Signed-off-by: Dong Yang <dongy@dongy-mlt.client.nvidia.com> * update largest cc function Signed-off-by: Dong Yang <dongy@dongy-mlt.client.nvidia.com> * update largest cc function Signed-off-by: Dong Yang <dongy@dongy-mlt.client.nvidia.com> * update repo Signed-off-by: dongy <dongy@nvidia.com> Co-authored-by: Dong Yang <dongy@dongy-mlt.client.nvidia.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: dongy <dongy@nvidia.com>

* [DLMED] add ensure_channel_first Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* fixes #3791 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update docstring of invertd, update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes typo Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Signed-off-by: Peixin Li <pxli@nyu.edu> Co-authored-by: Nic Ma <nma@nvidia.com>

Signed-off-by: Yiheng Wang <vennw@nvidia.com>

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* fixes #3791 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update docstring of invertd, update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes typo Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Signed-off-by: Yiheng Wang <vennw@nvidia.com>

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

…tes (#3489) * update changelog for v0.8.1 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * rc4 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * prepare for mmar verion updates Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update for 0.8.1 Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* [DLMED] add ConfigComponent Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] totally update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add excludes Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update ComponentScanner Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] enhance doc Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] use load_submodules Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] remove locate Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add test to ensure all components support `locate` Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix min_tests Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add more doc-strings Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix flake8 Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] extract ConfigItem base class Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix typo Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * update instantiate util Signed-off-by: Wenqi Li <wenqil@nvidia.com> * [DLMED] optimize design Signed-off-by: Nic Ma <nma@nvidia.com> * update docstring Signed-off-by: Wenqi Li <wenqil@nvidia.com> * updating ConfigComponent Signed-off-by: Wenqi Li <wenqil@nvidia.com> * revise confi* Signed-off-by: Wenqi Li <wenqil@nvidia.com> * [DLMED] fix unit tests Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update function name Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com>

Nic-Ma and others added 30 commits November 12, 2021 06:25

[DLMED] fix fc error (#3324)

5c8f3bb

Signed-off-by: Nic Ma <nma@nvidia.com>

Add affine param to Affine transform (#3313) (#3318)

6f657a4

Signed-off-by: Sebastian Penhouet <sebastian.penhouet@airamed.de> Co-authored-by: Sebastian Penhouet <sebastian.penhouet@airamed.de> Co-authored-by: Nic Ma <nma@nvidia.com>

3313 Add affine arg to the dict transform (#3326)

9ddc9e6

* [DLMED] add affine to dict transform Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add unit tests Signed-off-by: Nic Ma <nma@nvidia.com>

3335 update clang-format download (#3340)

af21f11

* update clang-format download Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes unit test Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com>

fixes #3331 (#3334)

8a454bd

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

[DLMED] enhance metrics in workflow (#3341)

4d83fc0

Signed-off-by: Nic Ma <nma@nvidia.com>

[DLMED] refine doc (#3349)

0a7a4f1

Signed-off-by: Nic Ma <nma@nvidia.com>

fixes mednist dataset (#3348)

b86d751

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

close file (#3342)

33b6d61

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

3350 drops pytorch 1.5.x support (#3353)

2e83cd2

* drop pytorch 1.5.x Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update premerge gpu Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Fix casting for tile step (#3355)

c3fd5a9

Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com>

remove dynunetv1 blocks (#3360)

f7e4cc3

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

[DLMED] enhance doc-string (#3363)

d89807f

Signed-off-by: Nic Ma <nma@nvidia.com>

Update setup.cfg with tifffile and imagecodes (#3362)

a4e7ba0

* Add tiffile and imagecodes to build option dependencies Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * update optional dep Signed-off-by: Wenqi Li <wenqil@nvidia.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com>

unit tests for step (#3361)

9048166

Signed-off-by: myron <amyronenko@nvidia.com>

backward compatible as discrete (#3367)

e36fbd3

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

adds dints blocks (#3372)

73d9afa

Co-authored-by: dongy <dongy@nvidia.com>

[DLMED] add frame_dim (#3369)

d0e72fb

Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com>

wyli and others added 29 commits February 9, 2022 12:40

3750 skip setuptool 60.6 (#3751)

d41d45b

* ignore 60.6.0 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * workaround #3752 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes windows issue Signed-off-by: Wenqi Li <wenqil@nvidia.com>

3747 Enhance errors and docs according to Youtube feedback (#3759)

1d693a7

* [DLMED] enhance missing key error Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update doc Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com>

3765 Enhance create_multigpu_supervised_XXX for distributed (#3768)

227bad0

* [DLMED] add check for devices Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com>

3763 Enhance the doc of ThreadDataLoader for num_workers (#3770)

0dbf06c

autoformatting

f9e68d2

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

tests workaround

4826824

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

3616 test downloading issues (#3617)

d391b16

* 3616 test downloading issues Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com>

3725 fixes download test (#3728)

d27ab6c

* fixes test Signed-off-by: Wenqi Li <wenqil@nvidia.com> * skip when downloading fails Signed-off-by: Wenqi Li <wenqil@nvidia.com>

[DLMED] add default value (#3785)

e3a9730

Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com>

3795 Add ensure_channel_first to LoadImage (#3796)

2d35301

* [DLMED] add ensure_channel_first Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>

adds alias check (#3794)

eb947e8

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

3791 orientation xform warning spatial dims (#3792)

42603b3

* fixes #3791 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update docstring of invertd, update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes typo Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Update blossom-ci allow list (#3800)

817c1cf

Signed-off-by: Peixin Li <pxli@nyu.edu> Co-authored-by: Nic Ma <nma@nvidia.com>

change raise error to warnings for some metrics (#3804)

b39e7fa

Signed-off-by: Yiheng Wang <vennw@nvidia.com>

following Project-MONAI/tutorials#545 (#3802)

e21e6ee

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

3791 orientation xform warning spatial dims (#3792)

b2bd500

* fixes #3791 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update docstring of invertd, update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes typo Signed-off-by: Wenqi Li <wenqil@nvidia.com>

change raise error to warnings for some metrics (#3804)

4e09627

Signed-off-by: Yiheng Wang <vennw@nvidia.com>

following Project-MONAI/tutorials#545 (#3802)

3a08450

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Merge branch 'dev' into releasing/0.8.1

046e625

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Nic-Ma merged commit f34ad75 into Nic-Ma:3482-reference-resolver Feb 18, 2022

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merge master #372

merge master #372

Nic-Ma commented Feb 18, 2022

merge master #372

merge master #372

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Nic-Ma commented Feb 18, 2022

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