merge master#372

Merged

Nic-Ma merged 428 commits intoNic-Ma:3482-reference-resolverfrom Project-MONAI:dev

Feb 18, 2022

+34,578-16,208

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Commits on Nov 15, 2021

Commits on Nov 16, 2021

Commits on Nov 17, 2021

Commits on Nov 20, 2021

Commits on Nov 22, 2021

Commits on Nov 24, 2021

Commits on Nov 29, 2021

3402 Add support to set other pickle related args (#3412 )

Nic-Ma
and
monai-bot
authored

Commits on Nov 30, 2021

Commits on Dec 1, 2021

Commits on Dec 2, 2021

Commits on Dec 3, 2021

3429 Enhance the scalar write logic of TensorBoardStatsHandler (#3431 )
Nic-Ma
authored

Commits on Dec 6, 2021

3430 support dataframes and streams in CSVDataset (#3440 )

Nic-Ma
and
monai-bot
authored

Commits on Dec 8, 2021

improve error message if reader nott available (#3457 )
rijobro
authored

Commits on Dec 9, 2021

Commits on Dec 10, 2021

Commits on Dec 12, 2021

3466 3467 Add channel_wise and correct doc-string (#3469 )

Nic-Ma
and
monai-bot
authored

Commits on Dec 13, 2021

Commits on Dec 14, 2021

Commits on Dec 15, 2021

Commits on Dec 16, 2021

Commits on Dec 17, 2021

Commits on Dec 20, 2021

Commits on Dec 23, 2021

3535 - drop python 36 support (#3536 )
wyli
authored

Commits on Dec 30, 2021

Commits on Dec 31, 2021

skipping pretraining network loading when downloading is unsuccessful (#3558 )
wyli
authored

Commits on Jan 1, 2022

Commits on Jan 4, 2022

[pre-commit.ci] pre-commit suggestions (#3568 )
pre-commit-ci[bot]
authored
Improve NVTX Range Naming (#3484 )

bhashemian
authored and
wyli
committed
Removes redundant casting -- ensure tuple (#3495 )
wyli
committed
avoid 60.0.0 (#3514 )
wyli
committed
3525 Fix invertible issue in OneOf compose (#3530 )

Nic-Ma
authored and
wyli
committed
3539 Remove decollate warning (#3545 )

Nic-Ma
authored and
wyli
committed
[DLMED] enhance set_determinism (#3547 )

Nic-Ma
and
wyli
committed
skipping pretraining network loading when downloading is unsuccessful (#3558 )
wyli
committed
[DLMED] fix mypy errors (#3562 )

Nic-Ma
authored and
wyli
committed
3565 - adds metadata when loading dicom series (#3566 )
wyli
authored

Commits on Jan 5, 2022

Commits on Jan 6, 2022

update issue template for questions (#3597 )
wyli
authored

Commits on Jan 10, 2022

[DLMED] fix dtype issue (#3625 )
Nic-Ma
authored
3628 0-d array to_contiguous (#3629 )
wyli
authored
3559 Enhance DatasetSummary for several points (#3560 )

Nic-Ma
and
wyli
committed
3565 - adds metadata when loading dicom series (#3566 )
wyli
committed
498 Add logger_handler to LrScheduleHandler (#3570 )

Nic-Ma
authored and
wyli
committed
3581 Enhance slice_channels utility function (#3585 )

Nic-Ma
authored and
wyli
committed
3600 Apply unused kwargs for 3rd party APIs in WSIReader (#3601 )

Nic-Ma
authored and
wyli
committed
3610 Add ascontiguous utility and check in CacheDataset (#3614 )

Nic-Ma
authored and
wyli
committed
[DLMED] fix dtype issue (#3625 )

Nic-Ma
authored and
wyli
committed
3628 0-d array to_contiguous (#3629 )
wyli
committed
3624 Add kwargs to torch APIs of utilities (#3631 )
Nic-Ma
authored

Commits on Jan 11, 2022

Commits on Jan 13, 2022

Commits on Jan 18, 2022

Commits on Jan 20, 2022

support stack of images with channels (#3680 )
wyli
authored

Commits on Jan 21, 2022

3686 Skip workflow run if data is empty or the specified epoch_length is 0 (#3690 )
Nic-Ma
authored
capture windows permission error (#3633 )
wyli
committed
3632 Enhance GridPatchDataset for iterable API and data source (#3636 )

Nic-Ma
authored and
wyli
committed
[DLMED] add missing doc-string (#3646 )

Nic-Ma
authored and
wyli
committed
3578 Support single channel with OneHot format in KeepLargestConnectedComponents (#3647 )

Nic-Ma
authored and
wyli
committed
3648 Enhance correct centers for crop (#3652 )

Nic-Ma
authored and
wyli
committed
Delete testdata.nrrd (#3658 )
wyli
committed
3661 Add default values to CopyItems transform (#3662 )

Nic-Ma
authored and
wyli
committed
[DLMED] add label transform (#3666 )

Nic-Ma
authored and
wyli
committed
[DLMED] change to warning (#3675 )

Nic-Ma
authored and
wyli
committed
3672 Add more messages for AUC warning (#3676 )

Nic-Ma
authored and
wyli
committed
3670 Fix channel_dim in ITKReader and add in it NibabelReader (#3678 )

Nic-Ma
authored and
wyli
committed
support stack of images with channels (#3680 )
wyli
committed
3686 Skip workflow run if data is empty or the specified epoch_length is 0 (#3690 )

Nic-Ma
authored and
wyli
committed
remove tensor-array conversion in Orientation (#3687 )
wyli
authored
3695 Update CI to ignite 0.4.8 (#3696 )

Nic-Ma
and
monai-bot
authored
adds a dev mode collate for diagnostic info (#3684 )
wyli
authored

Commits on Jan 25, 2022

Commits on Jan 26, 2022

Commits on Jan 27, 2022

Commits on Jan 28, 2022

3725 fixes download test (#3728 )
wyli
authored

Commits on Jan 30, 2022

Remove assert statement from non-test files (#3745 )

deepsource-autofix[bot]
and
monai-bot
authored

Commits on Jan 31, 2022

3750 skip setuptool 60.6 (#3751 )
wyli
authored

Commits on Feb 3, 2022

Commits on Feb 6, 2022

3763 Enhance the doc of ThreadDataLoader for num_workers (#3770 )
Nic-Ma
authored

Commits on Feb 7, 2022

Commits on Feb 9, 2022

remove tensor-array conversion in Orientation (#3687 )
wyli
committed
3695 Update CI to ignite 0.4.8 (#3696 )

authored and
wyli
committed
Fix differentiability of generalized Dice loss (#3619 )

josafatburmeister
and
wyli
committed
compiler warnings (#3698 )
wyli
committed
3710 Add support to set delimiter for CSV files and change default to comma (#3711 )

Nic-Ma
authored and
wyli
committed
[DLMED] fix mode issue (#3715 )

Nic-Ma
authored and
wyli
committed
fixes grid_sample, interpolate URLs (#3712 )
wyli
committed
3716 enhance doc-strings of DenseNet (#3717 )

yiheng-wang-nv
authored and
wyli
committed
update bbox docstring (#3724 )
wyli
committed
3750 skip setuptool 60.6 (#3751 )
wyli
committed
3734 Enhance CacheDataset to avoid duplicated cache (#3739 )

committed
3747 Enhance errors and docs according to Youtube feedback (#3759 )

Nic-Ma
authored and
wyli
committed
3765 Enhance create_multigpu_supervised_XXX for distributed (#3768 )

Nic-Ma
authored and
wyli
committed
3763 Enhance the doc of ThreadDataLoader for num_workers (#3770 )

Nic-Ma
authored and
wyli
committed
3769 Enhance logger logic of StatsHandler and DataStats (#3774 )

Nic-Ma
authored and
wyli
committed
autoformatting
wyli
committed
tests workaround
wyli
committed
3616 test downloading issues (#3617 )
wyli
committed
3725 fixes download test (#3728 )
wyli
committed
3744 Add save_state utility to handle saving logic (#3780 )
Nic-Ma
authored
3744 Add save_state utility to handle saving logic (#3780 )

Nic-Ma
authored and
wyli
committed

Commits on Feb 10, 2022

Commits on Feb 11, 2022

Commits on Feb 12, 2022

3795 Add ensure_channel_first to LoadImage (#3796 )

Nic-Ma
and
monai-bot
authored
adds alias check (#3794 )
wyli
authored

Commits on Feb 13, 2022

3791 orientation xform warning spatial dims (#3792 )
wyli
authored

Commits on Feb 14, 2022

Commits on Feb 18, 2022

3482 Add ConfigComponent for config parsing (#3720 )

Nic-Ma
and
wyli
authored