21.12.01

Dependencies

AMReX: release 21.12
openPMD-api: release 0.14.3

What's Changed

• [mini] fix typo in Zenodo metadata file by @MaxThevenet in #625

Full Changelog: v21.12...v21.12.01

v21.12

Dependencies

AMReX: release 21.12
openPMD-api: release 0.14.3

What's Changed

• Instructions on how to make a new release by @MaxThevenet in #614
• Set verbose level of MG solver by @AlexanderSinn in #615
• use correct CUDA version on maxwell by @SeverinDiederichs in #616
• control adaptive time step with hipace.dt by @MaxThevenet in #618
• deprecate hipace.do_adaptive_time_step by @SeverinDiederichs in #619
• Fix a data type problem with openpmd metadata writer by @MaxThevenet in #622
• MPI send buffer for the physical time by @MaxThevenet in #621
• Add image to doc page by @MaxThevenet in #620
• update version number by @MaxThevenet in #624

Full Changelog: v21.11.01...v21.12

21.11.01

Minor release to fix a bug enabling Zenodo DOI generation.

Dependencies

AMReX: release 21.11
openPMD-api: releases 0.12.0-0.14.*

List of PRs

• update release tag in all files

v21.11

Dependencies

AMReX: release 21.11
openPMD-api: releases 0.12.0-0.14.*

List of PRs

git log --since="2021-09-01" | grep -A 3 "Author: " | grep -B 1 "\-\-" | sed '/--/d' | sed -e 's/^    /- /'

• update release tag in all files (#613)
• add deprecated input check (#612)
• Docs: Tagfile (Doxygen) (#610)
• Use openPMD standard naming in python script (#609)
• add documentation for Parser (#608)
• Table of values for plasma density (#606)
• synchronize on destruct (#602)
• Variable plasma density (#605)
• improve maxwell installation documentation (#607)
• CMake: More Robust git STRIP (#603)
• documentation: linking openPMD-viewer and VisualPIC (#601)
• call pip with python3 -m (#600)
• fix missing space in doc (#598)
• add fix for docutils in requirements (#599)
• ROCm & rocFFT (#583)
• Add Parser (#595)
• change BeamParticleContainer to ParticleTile (#594)
• initialize PhysConst earlier (#592)
• Only store field comps written to file (#582)
• Enable longitudinal refinement (#574)
• Output field coarsening (#580)
• use correct inputs in NotifyFinish (#590)
• final fixed (#589)
• fix zenodo file with orcid (#588)

Notes

The release tag can be updated in all source files with

git grep -l '21.09' | xargs sed -i '' -e 's/21.09/21.11/g'

v21.09

This is the first official HiPACE++ release.

Dependencies

AMReX: release 21.08
openPMD-api: releases 0.12.0-0.14.*

List of PRs

git log | grep -A 3 "Author: " | grep -B 1 "\-\-" | sed '/--/d' | sed -e 's/^    /- /'

(in the future, one can use git log 21.09.. | grep -A 3 "Author: " | grep -B 1 "\-\-" | sed '/--/d' | sed -e 's/^ /- /')

• version 21.09
• openPMD-api: 0.14.2 (#585)
• interpolate rho and psi at the boundaries (#572)
• print precision in output (#581)
• proper bin policy for tile sort (#577)
• use _rt in GetDomainLev (#579)
• Fix offset of interpolation and use second order interpolation in x and y (#570)
• fix transverse size of IO for level 1 (#569)
• Fix handling of tiling and GPU (#576)
• OpenMP handling (#575)
• Particle tiling and OpenMP threading (#551)
• change test number of cells to be a multiple of 8... (#571)
• fix slice IO for MR (#568)
• use correct longitudinal index in InterpolateBoundaries (#567)
• Mesh refinement: fix MR on GPUs (#564)
• enforceBC works for all levels (#566)
• remove unused parameters (#560)
• CMake: Warn Unknown Build Type (#563)
• Fix: CUDA Host-Side -O3 with CMake (#562)
• Add a few beam profiles (#558)
• Field Interpolation (#557)
• [mini] document compile option -DAMReX_LINEAR_SOLVERS (#559)
• CMake: FFTW Search w/ CMake Install (#553)
• add seed to write_beam.py (#555)
• initialize the plasma on the correct level (#554)
• Mesh refinement: enable level 1 to be longitudinally a different size than level 0 (#546)
• [mini] add missing/errorenous CMake in build description (#549)
• add OpenMP support for transverse and longitudinal derivative (#545)
• Unify forward and backward dst plans to save GPU memory (#537)
• Automatically use small DST for large Resolutions (#548)
• add OpenMP to CI tests (#547)
• New Discrete Sine Transformation (#534)
• Mesh refinement: fix parallel runs (#544)
• Add OpenMP for FFTW (#541)
• rescale weight of beam in normalized units (#543)
• ccache now on the JSC Juwels Booster (#539)
• FFTW: CMakeConfig Support (Windows, OpenMP) (#540)
• fix includes (#533)
• pass vector of geometries to field solve functions (#536)
• fix a few style warnings on AMD (#535)
• clean loop over levels (#531)
• Mesh refinement: first working field solve on level 1 (#530)
• Mesh refinement: fix boxarray (#529)
• Mesh refinement: multiple Poisson solvers (#527)
• Mesh refinement: Adding IO (#526)
• remove unused parameters (#525)
• we dont seem to need Fields::m_F anymore (#524)
• first preparation to enable multiple levels (#523)
• when odd number of cells, no need to average to get slice io (#521)
• CMake 3.20+ and CUDA: Modernized AMReX (#522)
• Update RNG (#520)
• switch assert to >0 density in adaptive time step (#518)
• Add atomic mass table for Plasmas (#510)
• Add beam selection for IO (#514)
• [mini] Sphinx: fix link in typo (#516)
• initialize m_adaptive_density (#515)
• move Diagnostic class from Fields to Hipace class (#513)
• add Adios2 support (#508)
• add proton element for convenience (#507)
• [sphinx] add links and logos to package managers (#506)
• Add possibility to input multiple beams at once (#502)
• [mini] clearer naming of direction (#501)
• Renaming to HiPACE++ (#505)
• conversion to normalized units for explicit solver (#499)
• remove hardcoded lev calls (#503)
• enable multiple boxes per rank (#493)
• add the possibility to have different species of beams (#492)
• remove deprecated comment (#500)
• Fix mass calculation for Dalton (#497)
• fix typo (#498)
• fix typo in execution command (#495)
• fix typos in readme (#491)
• [mini] add documentation badge (#490)
• add doc for juwels and maxwell (#489)
• change names from WarpX to Hipace++ (#485)
• Add get_started example (#488)
• add subcycling for beams (#487)
• introduce subheaddings (#486)
• Last changes for going open-source (#484)
• Add Cl test for Beam input from_file (#479)
• communicate physical time (#482)
• add second flush for beam IO (#480)
• assert no ion motion with explicit solver (#477)
• assert explicit isn't used with SI (#478)
• clean a few compilation warning (#481)
• updating a few parameters in the sphinx documentation (#473)
• option to not compile the MG solver (#476)
• parallelization for beam deposition in next slice (#458)
• clean up input parameters for bxby solver (#475)
• adding more parameters to the sphinx documentation (#471)
• [mini] comply with convention for variable parameter names (#470)
• Add Plasma Ionization using ADK Model (#456)
• fix transverse beam currents for explicit solver (#468)
• Fix explicit solver (#459)
• CI test for hosing and ion motion (#466)
• add hollow core plasma profile (#463)
• change parabolic profile from channel_radius to parabolic_curvature (#464)
• cuFFTUtils: Add Missing Include (#461)
• minor update of available input parameters (#460)
• fix sign of psi (#455)
• remove wrong assert (#454)
• Fix shift in time between fields and beam in IO (#453)
• deposit jx and jy of the beam on the next slice (#451)
• Limit number of significant digits in checksums (#444)
• Use previous slice as MG initial guess for explicit solver (#450)
• store MG solver to initialize it only once, to improve performance (#449)
• Replace predictor-corrector by analytic integration and multigrid solve (#437)
• Call OpenPMDWriter::InitDiagnostics() only if they are actually written (#447)
• Add correlated energy spread (#446)
• Remove option to dump to plotfiles (#445)
• add the possibility to have a parabolic plasma profile (#415)
• openPMD: clean up 'injection_type = restart' and add SI units to beam output (#423)
• adding ion motion (#439)
• must pass charge and mass by reference (#438)
• set default for skip empty comms to false (#436)
• Enable multiple plasma species (#432)
• change assert in predictor corrector loop to Warning (#435)
• Stop communicating if only empty boxes downstream (#434)
• Print Version (#433)
• last rank needs to resize to remove particles from previous time step (#426)
• Fix b field error calculation (#430)
• add option to not deposit Jx and Jy of the beam (#431)
• add additional diagnostics for the predictor corrector loop (#427)
• CMake: Update AMReX Particle Precision (#425)
• remove deprecated parameter (#422)
• remove configure_mpiexec from cmake (#421)
• AMReX: Skip AMRLEVEL (#403)
• Add licensing files in preparation of open-source release (#419)
• [WIP] New pipeline (#407)
• Constant accelerating field (#372)
• Add a paragraph on wandpic in the tex file (#354)
• #190 Performance changes to linear_wake analysis (#348)
• only write important field data to file (#346)
• renaming to the correctly describing name peak_current_density (#350)
• only run CI on development (#352)
• Adding possibility to write current directly to grid (#349)
• adding profiling for SolveOneSlice() (#343)
• CMake: Quick, Local Dependencies (#347)
• openPMD: restart simulation and multiple Beams (#325)
• fix bug by using std::abs instead of abs (#340)
• Transverse beam redistribute (#339)
• assert that the number of cells doesn't overflow int (#342)
• only init openPMD data if outputperiod > 0 (#326)
• Remove redundant which_slice from plasma particle advance (#328)
• add helpful error message, if user specifies output_period=0 (#327)
• Doc: update tex file with the algorithm description (#323)
• send beam particle information only at initialization (#322)
• [SCALING TEST] Only allocate required field components in each slice (#320)
• Readin from HiPACE-C files improved + conversion script (#315)
• openPMD-api: new CMake Control (tests) (#312)
• Optimize packing and unpacking particles to pinned memory buffers. (#308)
• README: openPMD-api Install (#313)
• removing namespace io (#311)
• checksum.py: unused import "re" (#310)
• openPMD: 0.13.1 (#309)
• Reset plasma particle weight to the initial value (#302)
• fix compiler warning for compiling without openPMD (#303)
• Make openPMD default, including for CI (#291)
• Encapsulate field IO, first step to multiple slice IO (#300)
• fix #ifdef OPENPMD to get rid of compiler warnings (#299)
• add ifdef AMREX_USE_MPI around communication functions (#298)
• Fix non-blocking communication for adaptive time step (#296)
• cleaning of the openPMD beam write PR (#294)
• [mini] Clean compiler warnings (#293)
• checksum tests: abstract the backend, to enable either openPMD or yt (#292)
• Remove the option slice_beam: it is ALWAYS true (#289)
• openPMD: read input beam from HDF5 file (#285)
• Fixing momentum for openPMD I/O (#286)
• Sending info for adaptive time step via nonblocking communication (#282)
• openPMD: cleaning (#281)
• fixing typo in notify finish (#280)
• openPMD default Path: as in WarpX (#278)
• openPMD: write beam data (#277)
• Use HDF5 File to input Beam with openPMD (#276)
• [WIP] openPMD: Collective Open & Group Based (#274)
• openPMD: Guard Output, Avoid 2x Copy (#275)
• [openPMD] Communication of upstream beam particle number (#269)
• openPMD: Rebased Handle fields with Guards (#272)
• revert collective open (#273)
• openPMD: Collective Open & Group Based (#270)
• [mini] option to disable z push of beam particles (#268)
• CMake: Update GPU Backend Vars (#267)
• Add missing Device::synchronize() calls to Wait() and Notify(). (#266)
• openPMD output (fields) (#265)
• fixing index error in DST (#264)
• Accelerating CI (#263)
• Fix a classic implicit capture of *this bug (#262)
• Longitudinal particle exchanges (#261)
• also send the ion charge density inn pipeline (#259)
• Fix bug in which plasma particles were not being initialized on the right proc. (#258)
• typo i...